Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02222 atggaTTTCAATGTGGTCATGTTTGCTCTATTTGTTGTTAGCTCATTCACAATTATTTCAACAGATGCAGTTGAAGTTTCAACTATTCGTCACATTGGTAACTTGACTCGGAAAAGTTTCCCTCATGGCTTCACCTTTGGGGCGGGTTCGTCTGCATACCAATTTGAAGGTGCATATAAGGAAGATGGTAAAGGACCAAGTATCTGGGACACCTTCACCCATAATCAcccagAAAAAATAAGAGATGGAAGCAATGCAGACATCACTGTTGACCAATATCACCGCTACAAGGAAGATGTTAAGATTATGAAGGATCAAAATATGGATTCGTATAGATTCTCAATCTCTTGGCCAAGAATACTCCCAAAGGGAAAGTTGAGCGGAGGCATAAATCAGAAAGGAATCAAATATTACAACAACCTCATCAACGAATTGTTGGCTAATGGTATACAACCATTTGTAACTCTTTTTCACTGGGATCTTCCCCAAGTCTTAGAAGATGAGTATGGTGGTTTCTTAAGTTCCCAAATAATAGATGATTTTCAAGACTATGCGGATCTTTGCTTCAAGGAATTTGGAGATAGAGTGAAATACTGGAACACTCTGAACGAGCCATGGCTTTTTAGCAATGGTGGATATGCATTGGGAACAACAGCGCCAGGTCGATGTTCAGAACCAACATGCTTGGGTGGTGACTCTGGCATAGAACCTTATATAGTGACACATAATCAAATTCTTGCTCATGCAAAAGCCGTACATGTATACAAGAATATGTATGAgGCAGTTCAAAAGGGGCAGATAGGCATAACATTGGTAACTAACTGGTTTGTACCACTTGGAGACAATAGCATACCAGATAAAAAGGCTACCCAAAGAGCACTTGACTTTCAATTTGGATGGTATAAGTTTATGGAACCCTTAACAACGGGAGATTATTCTAAAAGCATGCGAGCCATAGTGAAAAGTCGATTACCTACGTTCACTAAATCACAATCAAGAGAAGTAAAtggttcatttgattttatTGGTTTAAATTATTACTCTTCTAGCTATATTAACAATGCCCCTCCACAAGGGAATGCAAAACCCAGTTTCACAACAGATCCTATGACCAATACTTCATTTGAAAAAAATGGGGTACCCCTAGGTCCAAGGGCTGCTTCGGTTTGGATATATGTTTATCCAAAGGGACTTCGGGATCTTTTGTTACATAttaagaataaatataataatccTGCAATTTACATCACTGAAAAtgGTATGAATGAATTCAACGATCCAACACTTTCGGTAGAAGAAGCTCTTCTAGATAATTACAGAATTGATTACTATTATCGTCATTTCTACTACATTCGTTCTGCCATCAAGAGCGGCTCAAATGTAAAGGGATTTTTTGCATGGTCACTTTTGGACTCTTATGAATGGTTTAATGGCTTTACCGTTCGTTTTGGATTAAACTTTGTAGATTACGAAAATGGATTGAAAAGGCACCCTAAACTTTCTGCCCTATGGTACAAGAACTTTCTCAAAAGAGCCTAA 1539 0.3723 MDFNVVMFALFVVSSFTIISTDAVEVSTIRHIGNLTRKSFPHGFTFGAGSSAYQFEGAYKEDGKGPSIWDTFTHNHPEKIRDGSNADITVDQYHRYKEDVKIMKDQNMDSYRFSISWPRILPKGKLSGGINQKGIKYYNNLINELLANGIQPFVTLFHWDLPQVLEDEYGGFLSSQIIDDFQDYADLCFKEFGDRVKYWNTLNEPWLFSNGGYALGTTAPGRCSEPTCLGGDSGIEPYIVTHNQILAHAKAVHVYKNMYEAVQKGQIGITLVTNWFVPLGDNSIPDKKATQRALDFQFGWYKFMEPLTTGDYSKSMRAIVKSRLPTFTKSQSREVNGSFDFIGLNYYSSSYINNAPPQGNAKPSFTTDPMTNTSFEKNGVPLGPRAASVWIYVYPKGLRDLLLHIKNKYNNPAIYITENGMNEFNDPTLSVEEALLDNYRIDYYYRHFYYIRSAIKSGSNVKGFFAWSLLDSYEWFNGFTVRFGLNFVDYENGLKRHPKLSALWYKNFLKRA 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02222 512 PANTHER GLYCOSYL HYDROLASE 3 511 IPR001360 GO:0004553|GO:0005975
Tsu02g02222 512 PRINTS Glycosyl hydrolase family 1 signature 414 422 IPR001360 GO:0004553|GO:0005975
Tsu02g02222 512 PRINTS Glycosyl hydrolase family 1 signature 482 494 IPR001360 GO:0004553|GO:0005975
Tsu02g02222 512 PRINTS Glycosyl hydrolase family 1 signature 437 448 IPR001360 GO:0004553|GO:0005975
Tsu02g02222 512 PRINTS Glycosyl hydrolase family 1 signature 458 475 IPR001360 GO:0004553|GO:0005975
Tsu02g02222 512 PRINTS Glycosyl hydrolase family 1 signature 338 352 IPR001360 GO:0004553|GO:0005975
Tsu02g02222 512 ProSitePatterns Glycosyl hydrolases family 1 active site. 414 422 IPR018120 -
Tsu02g02222 512 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 44 58 IPR033132 -
Tsu02g02222 512 Gene3D Glycosidases 20 511 - -
Tsu02g02222 512 PANTHER GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN 3 511 - -
Tsu02g02222 512 Pfam Glycosyl hydrolase family 1 37 510 IPR001360 GO:0004553|GO:0005975
Tsu02g02222 512 SUPERFAMILY (Trans)glycosidases 30 510 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02222 Tsu-Chr2 22185758 22213381 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02222 8 509 Glycoside Hydrolase AT5G44640 53.543 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02222 - K01188 gmx:778162 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02222 02 22185758 22213381 Tsu02g02222 02 22185758 22213381 ECH