LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g02218	ATGGCATTTAACAATAGATATCTCCTATTTTCTCTCATACCTTTAGTTTCAACAATATTTATCATTACTTTAACACAAGGTGAACAAATAATTAATACACTGCAGATAGCTTCATTGAATAGAAATGATTTCCCCAAAGGCTTCATCTTTGGCACAGCCTCATCTGCATATCAGTATGAAGGTGCAGCTAGTGAGGGTGGAAGAGGACCAAGTATTTGGGATACTTTCACTCATAGATATCCACAAAAAATCAGTGATGGAAACAATGGAGATGTTGCAGTTGATTCATATCATCGTTATAAGGAAGATGTTGGGATCATGAAGGATATGAACTTAGATGCATATAGATTTTCCATATCTTGGTCTAGAATACTTCCAAATGGAAAACTAAGTGGAGGAATTAATCAAGAAGGAATCGATTATTACAATAACCTCATCAATGAATTGTTGGCAAATGGTTTAGAACCATTTGTAACTCTTTTTCATTGGGATCTTCCTCAATCACTAGAAGATGAATATGGAGGCTTCTTGAGCCCTCTCATCATAAAAGACTTTCAGGACTATGCAGAACTTTGCTTTAAAGCATTTGGAGATAGAGTAAAACATTGGATAACCTTAAATGAGCCATGGAGTTACAGTCAAAATGGATATGCAAATGGCGCAATGGCACCAGGTCGGTGCTCTTCTTGGTTAAATCCAAATTGCACTGGTGGTGATTCTGGAACAGAACCTTATTTAGTTTCACATTACCAACTTCTAGCTCATGCAGCGGCTGTTAATGTGTACAAGACCAAATACCAGGTCTCTCAAAATGGTTTGATAGGTATAACATTAATCATTAATTGGTTCGTACCGCTATCGGATAACAAACTTAATCAAAAAGCTGCTGAGCGGGCTGTAGACTTTATGTTTGGATGGTTCATGGATCCCCTAACCATCGGAGATTATCCAAAAACCATGCGAGCTTTGGTCAGAACACGGTTACCAAAATTTAGTAAAGAGCAATCTAGACTTGTACGtggttcatttgattttatTGGTGTCAACTACTACACTTCTAGTTATGCTTCTGATGCACCTCAATTAAGCAATGCAAATTCTAGCTACCTAACAGATTCTCTTTCTCGTTCTTCTTTAACTAAGAAATTTTTAATGTGTATTTACGTGCAGGTTGCTTCAGATTGGTTATATGTTTATCCAAGAGGAATTCGAGACTTTTTAATTTACGCTAAAGAAAAATACAACAATCCTTTAATTTATATCACTGAAAACGGTATAAATGAATATGATGATCCTTCATTATCTATTAAGGAATCTCTTTTAGATACTTATAGAGTTGATTATTATTACCGCCATCTTTTTTATCTAAGGGAAGCAATCAAGGCTGGTGTAAATGTAAAAGGATATTTTGCATGGTCTTTGTTGGACAACTTTGAATGGCACAGAGGTTACACCGTCAGATTTGGAATGACTTTCATAGATTATAAAAATGGTTTGAAAAGATATCAAAAACTCTCAGGATTATGGTTTAAGAATTTTCTCACGCCAGACATCAAACTTATAGATTCCATTTAA	1575	0.3505	MAFNNRYLLFSLIPLVSTIFIITLTQGEQIINTLQIASLNRNDFPKGFIFGTASSAYQYEGAASEGGRGPSIWDTFTHRYPQKISDGNNGDVAVDSYHRYKEDVGIMKDMNLDAYRFSISWSRILPNGKLSGGINQEGIDYYNNLINELLANGLEPFVTLFHWDLPQSLEDEYGGFLSPLIIKDFQDYAELCFKAFGDRVKHWITLNEPWSYSQNGYANGAMAPGRCSSWLNPNCTGGDSGTEPYLVSHYQLLAHAAAVNVYKTKYQVSQNGLIGITLIINWFVPLSDNKLNQKAAERAVDFMFGWFMDPLTIGDYPKTMRALVRTRLPKFSKEQSRLVRGSFDFIGVNYYTSSYASDAPQLSNANSSYLTDSLSRSSLTKKFLMCIYVQVASDWLYVYPRGIRDFLIYAKEKYNNPLIYITENGINEYDDPSLSIKESLLDTYRVDYYYRHLFYLREAIKAGVNVKGYFAWSLLDNFEWHRGYTVRFGMTFIDYKNGLKRYQKLSGLWFKNFLTPDIKLIDSI	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g02218	524	Gene3D	Glycosidases	25	521	-	-
	Tsu02g02218	524	Pfam	Glycosyl hydrolase family 1	41	515	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02218	524	SUPERFAMILY	(Trans)glycosidases	34	514	IPR017853	-
	Tsu02g02218	524	ProSitePatterns	Glycosyl hydrolases family 1 active site.	419	427	IPR018120	-
	Tsu02g02218	524	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	48	62	IPR033132	-
	Tsu02g02218	524	PANTHER	GLYCOSYL HYDROLASE	7	519	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02218	524	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	7	519	-	-
	Tsu02g02218	524	PRINTS	Glycosyl hydrolase family 1 signature	463	480	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02218	524	PRINTS	Glycosyl hydrolase family 1 signature	442	453	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02218	524	PRINTS	Glycosyl hydrolase family 1 signature	419	427	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02218	524	PRINTS	Glycosyl hydrolase family 1 signature	342	356	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02218	524	PRINTS	Glycosyl hydrolase family 1 signature	487	499	IPR001360	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g02218	Tsu-Chr2	22009557	22033344	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g02218	6	515	Glycoside Hydrolase	AT5G44640	54.492	0.0	580

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g02218	-		K01188	gmx:100792870	852.818