LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g02215	atgacattcaATTACCTTCTCTTCTTCATTTCTTTAGTTGTTGTTCTTAGTAATTCAAATATTGTGAATTGCATAgaaaatgttgaagttgaacctATTATTGATATTGCTACATTCAATAGAAATAGTTTCCCTCAAGACTTTATCTTTGGAGCAGGTTCCTCTTCCTACCAgTTTGAAGGTGCAGCAAAAGAAGGAGGTAGAACACCAAGTATATGGGACACATTTACTCATAGATATCCTGAAAAGATCATGGATGGAAGTAATGGAGATTTAGCCATTGACACATATCACCAATACAAGGAAGATGTTAGGATTATTAAAGATATGAACTTGGATTCATACAGATTCTCCATTTCATGGTCTAGAATATTGCCAAATGGAAAGCTTAGTGGTGGTGTAAATCAAGAAGGAATCGACTTTTACAACAACTTCATCAATGAGTTACTAGCTAATGGTATAAAACCATTAGTGACTCTTTTCCATTGGGATCTCCCTCAAGCTTTGGAAAATGAGTATGGTGGTTTCTTAAGCCCTCTCATTGTaAAAGATTTTCAAGATTATGCGAAACTTTGTTTTAAAGAATTTGGTGATAGAGTTAAATATTGGGTTACATTGAATGAACCGTGGAGCTATAGCCAAAATGGTTATGCAAACGGGAGAATGGCACCAGGTCGTTGTTCTAGTTGGATGAATCTAAATTGTACCGGTGGCGATTCTGCCACAGAACCTTATATTGTTACACACAACCAACTCCTTGCACATGCCGCAGCTGTGGAAgtatacaagaaaaaatatcagGAATCTCAAAAGGGTGTAATAGGCATAATCATGGTAGCTAATTGGTATATTCCACTCTCAGATTCCAAACCTGATGAAAAAGCAGCAGAAAGAGCAATTGATTTCATGTATGGATGGTTTATGGATCCACTAACATCAGGAGATTATCCCAAAAGTATGAGATCTCTTGTTGGCTCTAGGTTGCCAAAATTCAATGCAAAACAAACTAGACTACTTattggttcatttgattttatTGGTTTGAACTATTACTCTTCAACATATGCATCTGATGCACCTTTGTTAAACAATGATAGACCTAGCTACTTAACAGATTCTTTGGTCACTCAATCATTCGAGCGCAACGGAAAACCCATTGGTATTAAGATTGCTTCAGATTGGTTGTATGTTTGCCCAAGAGGAATTCGTGACATTTTGTTATATACCAAAGAAAAGTACAATAATCCTTCTATTTACATCACTGAAAATGGTATAAATGAATATGAGGATCCTACATTATCAGTTGAGGAATCGCTCATAGATACTTTTCGAATTGATTACCATTATCGTCATCTTTTTTATCTTCGATCTGCCATTAGAGAAGGTGCAAATGTAAAGGGTTATTATGTATGGTCTTTGTTCGACAATTTTGAATGGTCATCAGGTTATAGTGTAAGATTTGGCATGACCTTTGTGGATTACAAGAATGGCTTGAAAAGATACCAGAAATTGTCTGCATTGTGGTTCaagatttttctcaaaaaagaaactaaacTTATGTTTCTAATGAGAAAGGTGTTGAAACAAGTGTGTAACTTGTAA	1602	0.3371	MTFNYLLFFISLVVVLSNSNIVNCIENVEVEPIIDIATFNRNSFPQDFIFGAGSSSYQFEGAAKEGGRTPSIWDTFTHRYPEKIMDGSNGDLAIDTYHQYKEDVRIIKDMNLDSYRFSISWSRILPNGKLSGGVNQEGIDFYNNFINELLANGIKPLVTLFHWDLPQALENEYGGFLSPLIVKDFQDYAKLCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWMNLNCTGGDSATEPYIVTHNQLLAHAAAVEVYKKKYQESQKGVIGIIMVANWYIPLSDSKPDEKAAERAIDFMYGWFMDPLTSGDYPKSMRSLVGSRLPKFNAKQTRLLIGSFDFIGLNYYSSTYASDAPLLNNDRPSYLTDSLVTQSFERNGKPIGIKIASDWLYVCPRGIRDILLYTKEKYNNPSIYITENGINEYEDPTLSVEESLIDTFRIDYHYRHLFYLRSAIREGANVKGYYVWSLFDNFEWSSGYSVRFGMTFVDYKNGLKRYQKLSALWFKIFLKKETKLMFLMRKVLKQVCNL	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g02215	533	PRINTS	Glycosyl hydrolase family 1 signature	342	356	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02215	533	PRINTS	Glycosyl hydrolase family 1 signature	462	479	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02215	533	PRINTS	Glycosyl hydrolase family 1 signature	418	426	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02215	533	PRINTS	Glycosyl hydrolase family 1 signature	486	498	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02215	533	PRINTS	Glycosyl hydrolase family 1 signature	441	452	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02215	533	Pfam	Glycosyl hydrolase family 1	41	516	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02215	533	PANTHER	GLYCOSIDE HYDROLASE FAMILY 1 PROTEIN	5	520	-	-
	Tsu02g02215	533	PANTHER	GLYCOSYL HYDROLASE	5	520	IPR001360	GO:0004553\|GO:0005975
	Tsu02g02215	533	Gene3D	Glycosidases	30	515	-	-
	Tsu02g02215	533	SUPERFAMILY	(Trans)glycosidases	32	513	IPR017853	-
	Tsu02g02215	533	ProSitePatterns	Glycosyl hydrolases family 1 active site.	418	426	IPR018120	-
	Tsu02g02215	533	ProSitePatterns	Glycosyl hydrolases family 1 N-terminal signature.	48	62	IPR033132	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g02215	Tsu-Chr2	21925121	21952413	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g02215	9	509	Glycoside Hydrolase	AT5G42260	54.980	0.0	573

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g02215	-		K01188	gmx:100776708	875.544