Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02213 ATGGCAGCATTTGATTTCAAAGTGTTTCTGTTACTATCTCTTTTATCCATTACTGTTTGTATCGATGCTTTTAAAGCTCTTCCTTTTAGTTTTGACGAATTTTCTGATCTCAATCGGAGTTGTTTCCCGCCAGACTTTGTTTTTGGAACAGCTTCCTCTGCTTTTCAGTATGAAGGTGCAGCATTTGAAGATGGAAAAGGACCAAGTATTTGGGATACTTTCACTCATAAATACCCAGAAAAAATAAGAGATAGAGGTAATGGAGATGTAGCTGACGACTCGTATCATCGGTACAAGGAAGATATTCGAATCATGAAGGATATGAATTTGGATGCTTATAGATTCTCTATTTCTTGGTCTAGAGTGCTTCCAAAAGGAAAGCTTAGTGGAGGTGTAAACCGCGAGGGAATAAACTATTACAACAACCTCATCAACGAAGTATTGGCTAATGGTTTGCAACCATATGTGACAATTTTCCATTGGGACGTTCCCCAAGCCTTAGAGGATGAGTATCGCGGTTTTCTGAGCCCTCACATCGTCGATGATTTTAGGGACTATGCtgaactttgtttcaaggaATTTGGTGATAGGGTGAAACATTGGATTACTTTAAATGAACCGTGGAGTGTGAGCATGAATGCTTATGCATTTGGAAAGTTTGCACCGGGTCGATGTTCAAATTGGTTAAAACTGAATTGCACAGGAGGCGATTCAGGTAGAGAACCATATTTGACTGCGCACTACCAACTTCTTGCTCATTCTGCTGCTGCAAGACTGTACAAAACCAAATATCAGGCATCTCAAAACGGTATAATAGGGATTACCTTAGTTTCTCACTGGTTTGAGCCGGCATCTCAAGAGAAAGCAGATGTTGATGCCGCAAGACGAGGCCTCGACTTCATGTTTGGATGGTTTATGCATCCACTCACAAAAGGCAGGTATCCGAAAAGCATGCGATCTTTGGTCGGAAAACGGCTACCAAAGTTCTCCAAAGAAGAATCCGTGAAACTTAAGGGGTCCTTCGATTTTCTGGGCCTAAACTATTACTCATCCTATTATGCCGCTAATACACCTCGCATAAGGAATGCCATACCAGCCATACAAACTGATTCTCTTATTAATGCTACATTTGAACATAATGGCAAGCCGCTTGGTCCAATGAGTGCTTCCAGTTGGTTATGCATTTATCCACGAGGATTTCGTCAACTTTTGCTTTACGTCAAGAATCACTACAATAACCCCGTAATTTACATTACCGAAAATGGTCGTGATGAGTTCAACGATCCAacactgtcacttcaagaatctcttTTAGATACTTACAGAATTGATTACTATTACCGTCATCTTTATTATCTTGAAACTGCAATCAGGGATGGTGTCAATGTAAAGGGATATTTTGCATGGTCATTGTTGGATAACATGGAATGGGAATCTGGCTTCAGCTTACGATTTGGACTCGTCTTTGTGGATTATAAAAACGACTTGAAAAGACACCCAAAACTCTCGGCGCATTGGTTTAAGAATTTCCTCAAAAAATCTTAA 1545 0.3922 MAAFDFKVFLLLSLLSITVCIDAFKALPFSFDEFSDLNRSCFPPDFVFGTASSAFQYEGAAFEDGKGPSIWDTFTHKYPEKIRDRGNGDVADDSYHRYKEDIRIMKDMNLDAYRFSISWSRVLPKGKLSGGVNREGINYYNNLINEVLANGLQPYVTIFHWDVPQALEDEYRGFLSPHIVDDFRDYAELCFKEFGDRVKHWITLNEPWSVSMNAYAFGKFAPGRCSNWLKLNCTGGDSGREPYLTAHYQLLAHSAAARLYKTKYQASQNGIIGITLVSHWFEPASQEKADVDAARRGLDFMFGWFMHPLTKGRYPKSMRSLVGKRLPKFSKEESVKLKGSFDFLGLNYYSSYYAANTPRIRNAIPAIQTDSLINATFEHNGKPLGPMSASSWLCIYPRGFRQLLLYVKNHYNNPVIYITENGRDEFNDPTLSLQESLLDTYRIDYYYRHLYYLETAIRDGVNVKGYFAWSLLDNMEWESGFSLRFGLVFVDYKNDLKRHPKLSAHWFKNFLKKS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02213 514 PANTHER BETA-GLUCOSIDASE, PUTATIVE-RELATED 33 513 - -
Tsu02g02213 514 PANTHER GLYCOSYL HYDROLASE 33 513 IPR001360 GO:0004553|GO:0005975
Tsu02g02213 514 SUPERFAMILY (Trans)glycosidases 34 512 IPR017853 -
Tsu02g02213 514 Pfam Glycosyl hydrolase family 1 40 513 IPR001360 GO:0004553|GO:0005975
Tsu02g02213 514 Gene3D Glycosidases 25 513 - -
Tsu02g02213 514 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 46 60 IPR033132 -
Tsu02g02213 514 PRINTS Glycosyl hydrolase family 1 signature 460 477 IPR001360 GO:0004553|GO:0005975
Tsu02g02213 514 PRINTS Glycosyl hydrolase family 1 signature 484 496 IPR001360 GO:0004553|GO:0005975
Tsu02g02213 514 PRINTS Glycosyl hydrolase family 1 signature 340 354 IPR001360 GO:0004553|GO:0005975
Tsu02g02213 514 PRINTS Glycosyl hydrolase family 1 signature 416 424 IPR001360 GO:0004553|GO:0005975
Tsu02g02213 514 PRINTS Glycosyl hydrolase family 1 signature 439 450 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02213 Tsu-Chr2 21900383 21904258 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02213 10 507 Glycoside Hydrolase AT5G42260 52.705 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02213 - K01188 gmx:100801874 817.764