Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02207 ATGCTTATGCAACAAATTAATTTAAGACCAAATTGTCTCATCTTGCAGAAGCCATGTCTAAATGGCATTGGCAATAACCAAACATGTTTTAAAGTCGGTTCATCAAGGCCTTTATTCACAAATCCAAAGAAACAAGGGAGGTTTAGTAGTAAAAATGGATGTAGCAAAATAAAAGCTCTGTCTATTAgtgaagaagaacaagaagcaataGAAAGAAAAGCAGTAAAAGTACAAGCCACAGTAACTGTTCAACCAACAGTTGGAGGGTTATTCTCAGAAATGATAATAGAAAGAGGACTTGATGACATAACTGATTTGTTGGGTAAATCAATTCTATTGGAGCTTTGTAGCTCCCAGCTAGATCCTGAGACATCATTGCAAAAGAAAAGAATCAAAGGTTATGTTCACTTGACACATCGATCAACACAAGAGTTGAAGTATGAATCTGAATTTGAAGTACCAGATAGTTTTGGAGAGATTGGTGCTGTTCTTGTGGAAAATGAGCATAGAAGGGAAATGTTTATAAAGCAAATTGTTCTTGATGGATTTCTCACTGGCCCTGTTAATTTTTCTTGTGATTCTTGGGTTCATTCCAAGCATGACAACCCTAATAAGAGGGTCATTTTCTCCAACAAGTCATATTTGCCATCTGAAACACCAGAAGGATTGAAAAAGTATAGAGAAGATGAACTGATAAATTTACGAGGCAATGGACAAGGCGAACGCAAGACCTTTGATCGAATATACGATTACGAAGTGTACAATGACCTCGGAGATGTAGACAAAGATCCCAACCTCAAGAGACCTATTCTCGGTGGCAAACTAAATCCATATCCTAGGCGCTGTAGAACCGGAAGACCTCGTTGCAAGACAGATCCATTGTACGAGAAAACAAGTAGAAGTGTCTACGTTCCTAGGGACGAATCATTCTCGGAAGTAAAACAACTCACATTTTCAGCAAATACCTTACAATCGGCTTTCCACGCGCTTTTACCAGCTTTGAGAACAGCTTCAATTGACGCAAATCTCGGATTTCCTCTTTTCTCATCCATAGATGACCTTTTCAATGAAGGATTTGACTTGCCTCCTCACAATGAGAAAGGTCTTAGGAGTGTGTTGCCAAGGTTGGTCAAATTTGTCCATGATGCTGGTAATGACATTCTCCGTTTCGAGACTCCTGCCACTATGGACAAGGACAGATTCTTTTGGTTTAGGGATGAAGAATTTGGAAGACAGACTATAGCAGGTCTTAATCCTTGTTGCATCCAATTGGTCACGGAATGGCCATTGAAAAGCAAACTTGACCCTAAAATTTACGGTCCTGCGGAATCAGCAATAACCACTAAACTAGTTGAGGAACAAATCAGAGGATTCACTACTGTTCAAGAGGCAATAAAACAGAAGAAGTTGTTCATCTTGGACTACTATGATTTTTTCTTGCCATTAGTAGAGGAAGTTAGAAAACTTGAAGGCACAACATTGTATGGATCAAGGACATTATTCTTCCTGCATGATGGCACATTGAGACCGCTAGCGATCGAGCTAGCTCGACCGCCGATTGGTGATAAGCCAATGTGGAGGGAAGTGTACAGACCTTCTTGGCACTCAACTGGTGTTTGGCTTTGGAGACTTGCTAAAGCTCATGTCCTTGCTCATGACTCTGGCTACCACCAACTTGTTAGTCACTGGCTGAGAACTCATTGTGCTACAGAACCATACATCATAGCAACAAACAGGCAACTAAGTGCAATGCATCCAATCTACAAACTATTACTTCCACATTTTAGATACACAATGGAAATCAATGCACTTGCACGTGAAGCACTAGTAAATGCAGATGGAATAATTGAAAGTAGTTTCACTCCCAAAAAACATTCTCTCTTAGTAAGTTCAATAGCCTATGACAAACATTGGCAATTTGACTTACAAGCCCTTCCAAATGACCTCATTCATAGAGGTTTGGCAGTAAAAGACCCAAATGCCCCTCATGGCTTAAAATTAACCATAGAAGATTACCCTTATGCAAATGATGGTCTTGATCTTTGGGATGCTTTAAAATCTTGGATCACTGATTATGTCAACATTTACTACAACAATGAAGAATCAAGAAATGTTGAGTCAGATAAAGAATTACAAGCTTGGTGGGATGAGATTAGAAATGTTGGTCACGGCGACAAGAAAGATGAACCATGGTGGCCtaatttgaaaacaaatgaAGATCTTATCGAAATAGTGACGACCATTGTTTGGATAACATCAGGGCATCATGCCGCGGTGAACTTCGGTCAGTACACTTATGCCGGATATTTTCCTAATAGACCGGCCATTGCCAGAAGCAACATGCCTACAGAAGACCCTTCAAACAACGAATGGGAGCTTTTCTTCGAGAAACCGGAAGTGACTTTGCTGAAGTGTTTTCCTTCACAAATTCAAGCTATGACGGTGATGACCGTGTTGGATATTTTGTCTAGTCATTCGCCGGACGAGGAATATCTTGGACAAACAATTGAGCCGGCTTGGGAAGATGAACCGTTGGTTAAAGCTGCTTTTGAGAAGTTTAAAGGGAAGTTGATGGAGCTTGAAGGTATAATTGATGAGAGGAATTTAGATGCGAACCTGAGGAATAGGAATGGAGCTGGAATTTTGCCTTATGAGCTTTTGAAACCAACTTCTGATGAGCCTGGTGTGACAGGAAAAGGTGTTCCATATAGCATCTCTATTTGA 2724 0.3976 MLMQQINLRPNCLILQKPCLNGIGNNQTCFKVGSSRPLFTNPKKQGRFSSKNGCSKIKALSISEEEQEAIERKAVKVQATVTVQPTVGGLFSEMIIERGLDDITDLLGKSILLELCSSQLDPETSLQKKRIKGYVHLTHRSTQELKYESEFEVPDSFGEIGAVLVENEHRREMFIKQIVLDGFLTGPVNFSCDSWVHSKHDNPNKRVIFSNKSYLPSETPEGLKKYREDELINLRGNGQGERKTFDRIYDYEVYNDLGDVDKDPNLKRPILGGKLNPYPRRCRTGRPRCKTDPLYEKTSRSVYVPRDESFSEVKQLTFSANTLQSAFHALLPALRTASIDANLGFPLFSSIDDLFNEGFDLPPHNEKGLRSVLPRLVKFVHDAGNDILRFETPATMDKDRFFWFRDEEFGRQTIAGLNPCCIQLVTEWPLKSKLDPKIYGPAESAITTKLVEEQIRGFTTVQEAIKQKKLFILDYYDFFLPLVEEVRKLEGTTLYGSRTLFFLHDGTLRPLAIELARPPIGDKPMWREVYRPSWHSTGVWLWRLAKAHVLAHDSGYHQLVSHWLRTHCATEPYIIATNRQLSAMHPIYKLLLPHFRYTMEINALAREALVNADGIIESSFTPKKHSLLVSSIAYDKHWQFDLQALPNDLIHRGLAVKDPNAPHGLKLTIEDYPYANDGLDLWDALKSWITDYVNIYYNNEESRNVESDKELQAWWDEIRNVGHGDKKDEPWWPNLKTNEDLIEIVTTIVWITSGHHAAVNFGQYTYAGYFPNRPAIARSNMPTEDPSNNEWELFFEKPEVTLLKCFPSQIQAMTVMTVLDILSSHSPDEEYLGQTIEPAWEDEPLVKAAFEKFKGKLMELEGIIDERNLDANLRNRNGAGILPYELLKPTSDEPGVTGKGVPYSISI 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02207 907 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 75 214 IPR036392 GO:0005515
Tsu02g02207 907 Pfam PLAT/LH2 domain 138 209 IPR001024 GO:0005515
Tsu02g02207 907 ProSitePatterns Lipoxygenases iron-binding region signature 1. 557 571 IPR020833 GO:0016702|GO:0046872
Tsu02g02207 907 Gene3D - 233 331 - -
Tsu02g02207 907 ProSitePatterns Lipoxygenases iron-binding region signature 2. 584 594 IPR020834 GO:0016702|GO:0046872
Tsu02g02207 907 PRINTS Lipoxygenase signature 539 556 IPR013819 GO:0016702|GO:0046872
Tsu02g02207 907 PRINTS Lipoxygenase signature 557 574 IPR013819 GO:0016702|GO:0046872
Tsu02g02207 907 PRINTS Lipoxygenase signature 577 597 IPR013819 GO:0016702|GO:0046872
Tsu02g02207 907 SMART LH2_4 75 211 IPR001024 GO:0005515
Tsu02g02207 907 Gene3D PLAT/LH2 domain 73 231 - -
Tsu02g02207 907 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 213 907 IPR013819 GO:0016702|GO:0046872
Tsu02g02207 907 Pfam Lipoxygenase 222 889 IPR013819 GO:0016702|GO:0046872
Tsu02g02207 907 ProSiteProfiles PLAT domain profile. 90 210 IPR001024 GO:0005515
Tsu02g02207 907 PRINTS Plant lipoxygenase signature 245 261 IPR001246 GO:0016491
Tsu02g02207 907 PRINTS Plant lipoxygenase signature 342 363 IPR001246 GO:0016491
Tsu02g02207 907 PRINTS Plant lipoxygenase signature 388 404 IPR001246 GO:0016491
Tsu02g02207 907 PRINTS Plant lipoxygenase signature 206 227 IPR001246 GO:0016491
Tsu02g02207 907 PRINTS Plant lipoxygenase signature 494 518 IPR001246 GO:0016491
Tsu02g02207 907 PRINTS Plant lipoxygenase signature 277 296 IPR001246 GO:0016491
Tsu02g02207 907 PRINTS Plant lipoxygenase signature 180 198 IPR001246 GO:0016491
Tsu02g02207 907 PRINTS Plant lipoxygenase signature 427 446 IPR001246 GO:0016491
Tsu02g02207 907 PRINTS Plant lipoxygenase signature 819 833 IPR001246 GO:0016491
Tsu02g02207 907 CDD PLAT_LH2 75 211 IPR042057 -
Tsu02g02207 907 Gene3D - 420 553 - -
Tsu02g02207 907 Gene3D - 554 905 - -
Tsu02g02207 907 SUPERFAMILY Lipoxigenase 215 907 IPR036226 -
Tsu02g02207 907 PANTHER LIPOXYGENASE 22 905 - -
Tsu02g02207 907 PANTHER LIPOXYGENASE 22 905 IPR000907 GO:0016702|GO:0046872
Tsu02g02207 907 Gene3D - 334 419 IPR027433 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02207 Tsu-Chr2 21818309 21825721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02207 153 907 Acyl Lipid Metabolism Gene Families AT3G45140 57.632 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02207 K00454 - gmx:100787202 1392.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02207 02 21818309 21825721 Tsu02g02207 02 21818309 21825721 ECH