LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g02173	ATGGCATATCTTCCCCAATTAAACTTTCCCACCCCTATCTCTTCTTCCTACACCATCCCTAAAACCCCAAACCCCATTTTCTCATTTCACTACACTCTTCCTTTTTCCACTTCAATTCTTTCTCAACCTAAATCATCCATTTCTCTCCCTCGCCGGACCCTCTCCCGCTCCATACCGCAATTCACCGCCACTACTGGCGATGACGACGATGAACTATTACCAGACGAATTGGACAACGAGGTTGATTATTTAGATGAGGATGAAGACGTTGATGTCGATGTCGTTGCGCTCGAGCAAGAAGCGAAGGAAGTTGTGCTGGAGTATTCAAGCTCTCTTTCTCGCGTTTTGACTATCGAAGAAGAGAGAAGTAATGTAAAGGAAACGGGTAAAAACTCAAAGAGGAGTAAaccgaagaaaaaaattATCCCTGACAATCTTCTCCCAAGGATTGCTATTGTTGGAAGACCAAATGTTGGCAAGTCAGCATTATTTAATCGTCTTGTTGGGGCAAACAAGGCTATCGTGGTGGATGAACCTGGGGTTACTAGGGATCGTTTATATGGCCGATCATATTGGGGAGATCATGAATTCATGGTGGTGGATACTGGTGGTGTTATCACTGTTTCAAAATCACAAAGTACTGTTATGGAAGAGCTGGATATTAGTACAACTATTGGTATGGATGGTATTCCCCTTGCCTCTAGAGAGGCAGCTGTTGCCAGGATGCCGTCAATGATTGAGAAACAAGCGATTGCAGCTGTCGAAGAATCACCTGTTATTATTTTCCTGGTTGATGGTCAGGCAGGTCTAATAGCAGCTGATGTGGAGATTGCCGATTGGCTACGTAAAAACTACTCAAATAAAAGTATCATTCTTGCAGTTAACAAGTGTGAATCTCCACGGAAAAGAATTATACAGGTGTCTGAATTTTGGTCCCTTGGGTTTGAACCAATTCCAATATCAGCTATATCAGGGTCTGGAACTGGAGAGCTTCTTGACCTTGTTTGTTCAGGGATTCAGAAAGTTGAGGAGCCAAATAAtattgttgaagaagaagattatgTTCCAGCAATTTCAATTGTTGGTAGACCAAATGTTGGCAAAAGTAGTATTTTGAATGCATTGGTTGGTGAGGACAGAACAATAGTCAGCCCCATCAGTGGCACTACACGTGATGCTATTGATACTGAATTTACTGCACCAGATGGCCAGAAGTTCCATCTTATTGATACTGCTGGAATCAGGAAAAGAACAGCTGTAGCCTCGGCTGGAAGTACAACAGAGGCGTTGTCGGTGAATCGAGCATTTCGTGCTATTCGGCGTTCTGATGTTGTTGCTCTTGTCATTGAGGCCATGGCTTGTATCACTGAACAGGACTTCAAGATAGCTGAAAGGATAGAAAAAGAAGGGAAAGGTTGTGTGATCGTTGTAAACAAATGGGATACAATACCAAATAAAAATCAGCAGACTGCATTATACTATGAGCAAGATGTCAGAAAGAAGCTTCGTTTACTTGACTGGGCTCCAATTGTTTATTCTACTGCTCTAGCTGGCCAAAATGTTGACAAgATCATTGTTGCTGCTAGTGAAGTAGAAAAGGAGAGATCAAGAAGACTGGGTACTTCAATATTGAATCAAGTAGTACGGGAAGCAGTAACTTTTAAGCCTCCTCCCAGGACACGTGGCGGAAAAAGAGGGCGTGTTTACTATTGCACTCAGGCTGCTATAAGGCCGCCTACATTTGTGTTCTTTGTCAATGATGCAAAACTTTTTCCTGAAACTTACCGACGCTTTATGGAGAAGCAGCTGCGTTCAAATGCAGGATTTCCTGGTACTCCCATTCGGCTTCTGTGGCGCAGcagaagaaaaatggaaaaagatGAAGGAAAAAAGGTTACAAGGACCAAAGAAAATCGTGCGCCACACCGTCGAAAATTGATCTCAGCTACACAGTAG	1956	0.4197	MAYLPQLNFPTPISSSYTIPKTPNPIFSFHYTLPFSTSILSQPKSSISLPRRTLSRSIPQFTATTGDDDDELLPDELDNEVDYLDEDEDVDVDVVALEQEAKEVVLEYSSSLSRVLTIEEERSNVKETGKNSKRSKPKKKIIPDNLLPRIAIVGRPNVGKSALFNRLVGANKAIVVDEPGVTRDRLYGRSYWGDHEFMVVDTGGVITVSKSQSTVMEELDISTTIGMDGIPLASREAAVARMPSMIEKQAIAAVEESPVIIFLVDGQAGLIAADVEIADWLRKNYSNKSIILAVNKCESPRKRIIQVSEFWSLGFEPIPISAISGSGTGELLDLVCSGIQKVEEPNNIVEEEDYVPAISIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTAPDGQKFHLIDTAGIRKRTAVASAGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQDFKIAERIEKEGKGCVIVVNKWDTIPNKNQQTALYYEQDVRKKLRLLDWAPIVYSTALAGQNVDKIIVAASEVEKERSRRLGTSILNQVVREAVTFKPPPRTRGGKRGRVYYCTQAAIRPPTFVFFVNDAKLFPETYRRFMEKQLRSNAGFPGTPIRLLWRSRRKMEKDEGKKVTRTKENRAPHRRKLISATQ	651

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g02173	651	Hamap	GTPase Der [der].	147	622	IPR016484	GO:0005525
	Tsu02g02173	651	CDD	EngA2	358	531	-	-
	Tsu02g02173	651	PANTHER	GTP-BINDING PROTEIN	131	629	-	-
	Tsu02g02173	651	PANTHER	GTPASE DER	131	629	-	-
	Tsu02g02173	651	ProSiteProfiles	EngA-type guanine nucleotide-binding (G) domain profile.	356	536	IPR031166	GO:0005525
	Tsu02g02173	651	TIGRFAM	small_GTP: small GTP-binding protein domain	356	525	IPR005225	GO:0005525
	Tsu02g02173	651	CDD	EngA1	151	339	-	-
	Tsu02g02173	651	Pfam	50S ribosome-binding GTPase	149	296	IPR006073	GO:0005525
	Tsu02g02173	651	Pfam	50S ribosome-binding GTPase	358	479	IPR006073	GO:0005525
	Tsu02g02173	651	Gene3D	-	145	353	IPR027417	-
	Tsu02g02173	651	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	148	337	IPR027417	-
	Tsu02g02173	651	PRINTS	GTP1/OBG GTP-binding protein family signature	150	170	IPR006073	GO:0005525
	Tsu02g02173	651	PRINTS	GTP1/OBG GTP-binding protein family signature	247	265	IPR006073	GO:0005525
	Tsu02g02173	651	Gene3D	-	538	622	IPR015946	-
	Tsu02g02173	651	Gene3D	-	354	536	IPR027417	-
	Tsu02g02173	651	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	316	625	IPR027417	-
	Tsu02g02173	651	TIGRFAM	GTPase_EngA: ribosome-associated GTPase EngA	241	618	IPR016484	GO:0005525
	Tsu02g02173	651	Pfam	KH-domain-like of EngA bacterial GTPase enzymes, C-terminal	538	619	IPR032859	-
	Tsu02g02173	651	MobiDBLite	consensus disorder prediction	624	651	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g02173	Tsu-Chr2	21338054	21344308	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g02173	-		-	gmx:100777588	971.074

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu02g02173	02	21338054	21344308	Tsu02g02173	02	21338054	21344308	ECH