Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02172 ATGTTGAAGGTGGCAGTACGGTGGAATTGGAGGCAACTCTGTTCTCTCCCTCTAACTTGCATTACACACCAAAAACTACGCTCACGAAACCCTTATCTTCGTATTCCCAACTCGAAGCTCTTTTGTTCCGCTGCTCTTCAAACATCACCTTCTCTAAATGCTGAACTGGAACCATACCTCCGTTGTTCCATGCCGCAAAAGCCACTCCGAGTTGCCGTTCTTATCAGTGGAGGCGTCGACAGTAGTGTTGCTCTCCGGCTACTCCATGCTGCCGGTCATTCTTGTACTGCTTTCTACCTCAAGATATGGTTCCAAGAAGATTTTGAGAACTTCTGGTCGGAGTGCCCTTGGGAAGATGATTTAAAGTATGCTAAAAATGTTTGCAATCAGGTTGAAGTACCATTAGAAGTTGTTCATTTGACAGATGAATACTGGAAAAATGTGGTTTCTTACATCATTGAAGAGTATCGGTGTGGTCGAACTCCAAACCCGGATGTTCTTTGCAATACAAGAATAAAGTTTGgtGCATTTTTGGATGCAATTGGTGGTATGGGTTTTGACTATGTTGCATCTGGGCATTATGCAAAGGTTATTCACCCATTTACGGATAAGATGGATGGCCCTTCTATTCTAGAACTATCACAAGACACGGTAAAGGATCAAACTTACTTCTTATCACACCTATCTCAGTACCAGCTGAAGCGACTTCTTTTTCCACTTGGTTCTATTCCCAAGGACGAAGTCCGCAGGCTTGCCACAAAATTTGATCTACCAAATAAGGATAGAAAGGATTCCCAGGGAATATGCTTTTTGGGCAAGATAAAATTCAGTGAATTTGTTGCACGACATATTGGGGAGAAAGAAGGTATCATACTGGAAGCCGAGACAGGAGATTTCCTGGGCAAGCATCGGGGCTTCTGGTTTTATACTATTGGTCAACGCCAGGGTCTACGGCTACCCGGAGGTCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTGTTTGTGTCCAGAAACTACTTTTCCTTTGACAAAAGAAGGCGCATATTCCGTGTTGGTTCTTTAAAATGGCTTAGTGGGTTGCCCCCTAGCCAAACAAGTCAGCTTCGATGCAAGGTGAGACATGGTCCTGGGTTCTATGATTGTAGCTTACAAATGGAACTTGAAGGAGATAATGTAATTGACTCTGCTGTTGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTCACAGCCTTCTATGAGGGAAGAACGTGCATTGGTTCTGGTGTGATTTTGGAGTCCGGGGATGATCAAAGTTATCCTGTATGCGCAAAAGCTTTAGAAATTGCAAGAATGGAAGATAAATCAAAGATTGGGAATCCAGTTAAGATAAAAGTTAAACCAGATAACTCACAAGAACTGTGTGATTCTGCAGAATTGGCATGTAAAGCATCATAG 1455 0.4296 MLKVAVRWNWRQLCSLPLTCITHQKLRSRNPYLRIPNSKLFCSAALQTSPSLNAELEPYLRCSMPQKPLRVAVLISGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEDDLKYAKNVCNQVEVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYAKVIHPFTDKMDGPSILELSQDTVKDQTYFLSHLSQYQLKRLLFPLGSIPKDEVRRLATKFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKRRRIFRVGSLKWLSGLPPSQTSQLRCKVRHGPGFYDCSLQMELEGDNVIDSAVVRISEDDQGLAAGQFTAFYEGRTCIGSGVILESGDDQSYPVCAKALEIARMEDKSKIGNPVKIKVKPDNSQELCDSAELACKAS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02172 484 Gene3D HUPs 58 282 IPR014729 -
Tsu02g02172 484 Gene3D Translation factors 349 439 - -
Tsu02g02172 484 CDD tRNA_Me_trans 70 430 IPR004506 GO:0008033|GO:0016740
Tsu02g02172 484 PANTHER - 57 468 - -
Tsu02g02172 484 PANTHER BNAA08G29550D PROTEIN 57 468 - -
Tsu02g02172 484 TIGRFAM trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 70 430 IPR004506 GO:0008033|GO:0016740
Tsu02g02172 484 Pfam Aminomethyltransferase beta-barrel domain 350 430 IPR046885 -
Tsu02g02172 484 Gene3D - 283 342 IPR023382 GO:0016783
Tsu02g02172 484 Hamap tRNA-specific 2-thiouridylase MnmA [mnmA]. 69 431 IPR004506 GO:0008033|GO:0016740
Tsu02g02172 484 Pfam tRNA methyl transferase PRC-barrel domain 278 340 IPR046884 -
Tsu02g02172 484 Pfam tRNA methyl transferase HUP domain 70 273 - -
Tsu02g02172 484 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 70 315 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02172 K21027 - gmx:100785275 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02172 02 21331986 21336148 Tsu02g02172 02 21331986 21336148 ECH