Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02125 ATGCATGTTCTGCTAAGAATTACAACTCCTCTCAGAATTCCCACAAAAAATGCCATCTTCAACCATCGATTTCTCCGATCAGAACCCGAATCCTACGCTAAACTCATCGAAATATACACTCATGATCGAGCATTGCACCAAGGAAAGAAGCTTCACGCGCTTCTAACAACAAACGGCTACGTGCGTTTCAACCTCATTGCATCCAATCTCGTTGCCTTATACACATGCTGTGGCCAACTCTCTCTTGCACGaaaactgtttgataaaattccTCAAACAAGTGTTCGACGTTGGATTGCACTTATTGGGACATGTGCTCGCTGTGGCTTCTACGATCATGCTCTTGCTGTGTTTTCCGAGATGCAAACACTTCATGGCCAAAAGCCCGACAATGTCTTTGTGATTCCTAGTGTTCTTAAAGCTTGTGGCCATGTTTGTGATCGAGTTTATGGAGAGCAAGTgcattgtttgattttgaagtgTTCGTTTGAGATTGATGCTTTTGTTTCGAGTGGGTTGATTGTTATGTACTCCAAGTGTGGTAAAGTTGAGGATGCACGTAAGGTGTTTGATGGAATGGTTATGAAGGATTTGGTAGCTTTGAATGCTGTTGTTTCTGGGTATGCTCAACAAGGGCTTCCAAATGAGGCATTGGATTTGGTTGAAAAGATGAAGTTGATGGGTGTGAACCCAAATGTGGTGACATGGAATGCTTTGATATCTGGGTTTGCGCAGAAATGTGACCGGGTGATGGTATCTGAGATTTTCAGGTTGATGATTGAAGATGGAATTGAGCCTGATGTGGTGTCATGGACTTCTGTTATATCTGGTTTTGTGCAGAACTTTCGAAACGATGAAGCTTTTGATATGTTTAAGCAAATGTTGCATCATGGGTTCTGCCCAACTTCGGCTACTATCAGTGCACTTCTGCCAGCTTGTGCTACTGCAGCAAGAGTGAGGTTTGGGAAAGAGATTCATGGCTATGCTTTGGTGATTGGTGTGGAGGATGATGTATATGTAAGGAGTGCTCTGGTTGACATGTATGCAAAATGTGGGTTCATTTCTGAAGCTAGGACACTGTTCTATAAGATACCGGATAAGAACACGGTGACAATGAACTCTATGATTTTCGGTTATGCGAATCATGGGTATTGCCAAGAAGCTATTGAGCTCTTCAATCGGATGGAGATGGAAGGGGTAACCAAGCTAGATCATTTAACTTTCACGGCAGCTCTCACAGCATGTAGCCATGATGGAGATATTGAACTTGGGCAGAGGCTGTTCAAGATTATGCAAGAGAAATACTCTATTGAGCCACGATTAGAGCATTATGCATGCATGGTGGATCTTTTGGGTCGGGCAGGGAAACTCGAGGAAGCATATGGCATAATCAAGACTATGCCGGTTGAACCTGATTTGTTTGTGTGGGGTGCATTATTGGCTGCTTGTAGAAATCATGGGCATGTGGAGCTTGCAGAAGTGGCTGCTAAGCATTTGTCAGAGTTAGAACCAGAGAGTGCTGGGAACCGTCTTCTATTGTCCAGCTTGTATGCCGATGCTGGAAAATGGGGAAAGGTTGAGCGGATCAAGAGAAGGATAAAGAAAGGAAAACTCAGGAAACTTCAAGGATTGAGTTGGATAGATAATGTATAA 1653 0.4253 MHVLLRITTPLRIPTKNAIFNHRFLRSEPESYAKLIEIYTHDRALHQGKKLHALLTTNGYVRFNLIASNLVALYTCCGQLSLARKLFDKIPQTSVRRWIALIGTCARCGFYDHALAVFSEMQTLHGQKPDNVFVIPSVLKACGHVCDRVYGEQVHCLILKCSFEIDAFVSSGLIVMYSKCGKVEDARKVFDGMVMKDLVALNAVVSGYAQQGLPNEALDLVEKMKLMGVNPNVVTWNALISGFAQKCDRVMVSEIFRLMIEDGIEPDVVSWTSVISGFVQNFRNDEAFDMFKQMLHHGFCPTSATISALLPACATAARVRFGKEIHGYALVIGVEDDVYVRSALVDMYAKCGFISEARTLFYKIPDKNTVTMNSMIFGYANHGYCQEAIELFNRMEMEGVTKLDHLTFTAALTACSHDGDIELGQRLFKIMQEKYSIEPRLEHYACMVDLLGRAGKLEEAYGIIKTMPVEPDLFVWGALLAACRNHGHVELAEVAAKHLSELEPESAGNRLLLSSLYADAGKWGKVERIKRRIKKGKLRKLQGLSWIDNV 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02125 550 Pfam E motif 486 548 IPR046848 -
Tsu02g02125 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Tsu02g02125 550 TIGRFAM PPR: pentatricopeptide repeat domain 234 268 IPR002885 -
Tsu02g02125 550 TIGRFAM PPR: pentatricopeptide repeat domain 173 198 IPR002885 -
Tsu02g02125 550 TIGRFAM PPR: pentatricopeptide repeat domain 370 400 IPR002885 -
Tsu02g02125 550 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Tsu02g02125 550 TIGRFAM PPR: pentatricopeptide repeat domain 269 302 IPR002885 -
Tsu02g02125 550 Pfam PPR repeat family 266 314 IPR002885 -
Tsu02g02125 550 Pfam PPR repeat family 367 416 IPR002885 -
Tsu02g02125 550 Pfam PPR repeat family 196 244 IPR002885 -
Tsu02g02125 550 PANTHER OS03G0271300 PROTEIN 195 244 - -
Tsu02g02125 550 PANTHER OS03G0271300 PROTEIN 26 194 - -
Tsu02g02125 550 PANTHER OS03G0271300 PROTEIN 244 549 - -
Tsu02g02125 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 244 549 - -
Tsu02g02125 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 26 194 - -
Tsu02g02125 550 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 195 244 - -
Tsu02g02125 550 Gene3D Tetratricopeptide repeat domain 20 150 IPR011990 GO:0005515
Tsu02g02125 550 Gene3D Tetratricopeptide repeat domain 213 322 IPR011990 GO:0005515
Tsu02g02125 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Tsu02g02125 550 Pfam PPR repeat 444 467 IPR002885 -
Tsu02g02125 550 Pfam PPR repeat 98 122 IPR002885 -
Tsu02g02125 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Tsu02g02125 550 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Tsu02g02125 550 Gene3D Tetratricopeptide repeat domain 323 401 IPR011990 GO:0005515
Tsu02g02125 550 Gene3D Tetratricopeptide repeat domain 402 547 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02125 Tsu-Chr2 20934219 20935871 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02125 83 548 Glycoside Hydrolase AT3G49170 33.794 1.92e-84 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02125 - - gmx:100790576 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g02125 02 20934219 20935871 Tsu02g02125 02 20934219 20935871 ECH