Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02118 ATGATTTTCTCAAGAATTGGGCGTTCTCTATCGCGTTCTTCTCGCGTTAAAAATTTGTTGCACGGTGATTCGAGATTGGGAACGCCACTTTCTGGAGTTTCGCGAACAAATGTCTATTCTGAAGGAATTGAAAGGGGATTAGGGTTTTCAAAGGGTTATATAACTTCTGCAATAGCTCGCAATAATGGTTTTGTTTCTAATTTATCTGATTTTAAATCTGTTGCGGCAAACCCTAGTTTTCTTCGTTTGTTTTCAAGTGAATCCCCAAAGAAAAAGAATTATGAAAACTTTTATCCTAAGGAAAAGAAGGAAATTCCAAAgggagaagagaaaaaaaatgagtcTAAAgAGGAGTCAAAGTCAAACACTGATGATCAAGGaagttttcaagaaaatttcatgaaacaatttcaaaattatcTCACCCCATTGTTGGTGATCGGGCTATTGCTTTCATCCTTTCCTTTTGGTCCTCGTGAGCAGCAACAGATTAGCTTTCAGGAGTTTAAAAATAAGCTTTTGGAACCAGGATTAGTTGACCATATTGTTGTCTCCAACAAATCAGTTGCCAAAATATATGTGAGGAGCTCACCCCGTGATCAAACAGACAGTGAAGTATTCCAAGGAAACCTTCCTGCAAAGGGATCTGGTGGTCAATATAAATATTTGATCAATATTGGAAGTGTCGAGTCTTTTGAGGAGAAATTAGAGGAAGTGCAAGAAGCCCTAGGTGTTGACCCTCACGATTTTGTACCTGTTACGTATTCTTCTGAAATGGTTTGGTACCAGGAGTTGATGAGGTTTGCTCCAACCCTGTTGCTTTTGGGAACTCTCTTTTATATGGGAAGAAAAATGCAAGGTGGATTTGGtcttggtggtggtggtggtggtaagGGTCGTGGTGGAATATTTAACATCGGAAAAATTACTGTTCATAAAGTAGACAAAAATGCCAAAAATAAGGTCTATTTTAAAGATGTTGCTGGCTGTGATGAGGCAAAACAAGAAATTATGGAGTTTGTGCACTTCCTCAAGAATCCTAAGAAGTATGAAGAGCTTGGTGCCAAAATTCCTAAAGGTGCTCTTCTGGTGGGTCCCCCAGGCACGGGAAAAACACTTTTAGCAAAAGCAACTGCAGGGGAGTCTGGTGTGCCATTTCTTTCTATATCTGGTTCTGATTTCATGGAAATGTTTGTCGGTGTTGGACCGTCCAGGGTGAGAAACTTGTTTCAGGAAGCAAGGCAGAACGCTCCTAGTATAGTATTTATTGATGAGATTGATGCAATTGGTCGGAAAAGGGGTCGTGGAGGTTTCTCTGGTTCAAATGATGAGCGTGAAAGTACTTTAAATCAATTGTTGGTGGAGATGGATGGTTTTGGAACTACTGCTGGAGTTGTTGTGCTAGCAGGTACAAATAGAGCTGATATATTAGACAATGCCCTACTTAGACCTGGACGTTTTGACCGCCAGATATCACTTGATATCCCCGACATCAAAGGTCGTGACCAGATATTTCAGATTTACTTGAAAAAGATCAAACTTGACCACGAGCCCTCATATTATTCACAAAGGCTTGCAGCCCTTACTCCAGGATTTGCTGGAGCAGACATTGCTAATGTTTGCAATGAAGCTGCTCTGATTGCTGCAAGGACTAATGAATCACAAGTCACAATGGATCATTTTGAGGCAGCTGTTGATAGGATCATTGGTGGTTTGGAGAAGAAGAACAAGGTAATAAGTAAGCAGGAAAGGCGTACTGTTGCTTACCATGAAGCAGGTCATGCTGTTACAGGTTGGTTCTTGGAACATACTGATCCATTGTTGAAAGTAACCATTGTTCCTCGCGGAACAGCAGCTCTTGGGTTTGCCCAGTATGTTCCTAATGAGAACCTTCTCATGACAAAGGAGCAGCTTTTTGATATGACTTGTATGACCCTTGGTGGTCGGGCTGCCGAGAAGGTTCTCATCGGGACAATCTCTACAGGAGCGCAAAATGACTTGGAGAAAGTGACCAAGATGACATATGCCCAAGTAGCCGTCTATGGTTTCAGCGACAAAGTGGGCCTCCTCTCTTTCCCTCAAAGAGAGGACTCGTTTGAGATGTCCAAACCATACAGCAGCAAAACTGGTGCAATCATTGATACTGAAGTCCGAGAATGGGTGAACAAAGCATATGAACGTACCCTACAACTTGTAGAGGAACACAAGGAGAAAATAGCTCAAATTGCAGAGTTGCTGCTACAAAAAGAAGTACTTCACCAAGAGGACTTGCTTCGAGTCTTGGGAGAGCGACCCTTCAAGAGTGCTGAACCTACTCATTATGATAGATTTAAGTTAGGGTTTCAAGATGAGGAGAAAGTTATAGAAACCACTGTCAATGAATCCGAGGATGGTGGTGGGTCTTCACCTCTAGAACCCGAGGTTGTTCCCACATAG 2436 0.4056 MIFSRIGRSLSRSSRVKNLLHGDSRLGTPLSGVSRTNVYSEGIERGLGFSKGYITSAIARNNGFVSNLSDFKSVAANPSFLRLFSSESPKKKNYENFYPKEKKEIPKGEEKKNESKEESKSNTDDQGSFQENFMKQFQNYLTPLLVIGLLLSSFPFGPREQQQISFQEFKNKLLEPGLVDHIVVSNKSVAKIYVRSSPRDQTDSEVFQGNLPAKGSGGQYKYLINIGSVESFEEKLEEVQEALGVDPHDFVPVTYSSEMVWYQELMRFAPTLLLLGTLFYMGRKMQGGFGLGGGGGGKGRGGIFNIGKITVHKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLKNPKKYEELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFQEARQNAPSIVFIDEIDAIGRKRGRGGFSGSNDERESTLNQLLVEMDGFGTTAGVVVLAGTNRADILDNALLRPGRFDRQISLDIPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARTNESQVTMDHFEAAVDRIIGGLEKKNKVISKQERRTVAYHEAGHAVTGWFLEHTDPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEKVLIGTISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPQREDSFEMSKPYSSKTGAIIDTEVREWVNKAYERTLQLVEEHKEKIAQIAELLLQKEVLHQEDLLRVLGERPFKSAEPTHYDRFKLGFQDEEKVIETTVNESEDGGGSSPLEPEVVPT 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02118 811 Gene3D Peptidase M41 581 778 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu02g02118 811 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 10, MITOCHONDRIAL-LIKE 33 810 - -
Tsu02g02118 811 PANTHER ATP-DEPENDENT PROTEASE 33 810 - -
Tsu02g02118 811 SUPERFAMILY FtsH protease domain-like 578 768 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu02g02118 811 MobiDBLite consensus disorder prediction 791 811 - -
Tsu02g02118 811 Gene3D - 306 493 IPR027417 -
Tsu02g02118 811 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 12 776 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu02g02118 811 Pfam Peptidase family M41 578 759 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Tsu02g02118 811 Gene3D - 152 260 - -
Tsu02g02118 811 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 261 761 IPR005936 GO:0004176|GO:0004222|GO:0016020
Tsu02g02118 811 Pfam FtsH Extracellular 144 248 IPR011546 GO:0004176|GO:0004222|GO:0005524|GO:0008270|GO:0016021
Tsu02g02118 811 Pfam AAA+ lid domain 524 563 IPR041569 -
Tsu02g02118 811 Pfam ATPase family associated with various cellular activities (AAA) 362 493 IPR003959 GO:0005524|GO:0016887
Tsu02g02118 811 MobiDBLite consensus disorder prediction 95 124 - -
Tsu02g02118 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 568 IPR027417 -
Tsu02g02118 811 ProSitePatterns AAA-protein family signature. 465 483 IPR003960 GO:0005524|GO:0016887
Tsu02g02118 811 CDD AAA 358 494 - -
Tsu02g02118 811 Gene3D - 496 580 - -
Tsu02g02118 811 SMART AAA_5 357 497 IPR003593 -
Tsu02g02118 811 MobiDBLite consensus disorder prediction 95 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g02118 Tsu-Chr2 20783686 20789567 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02118 1 811 Miscellaneous Gene Families AT2G29080 73.934 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02118 K08956 - gmx:100806656 1275.38