Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g02025 ATGAAAGAAACCAATGTTCAATGTAATGAAACCCTTTTCATTGCTTTGTTTCAACATTATGGTCCTGTAAAAGCCATTGAACTCTTTCACAAAATGCCACATTTTAACTGTGTTCGTACTTTACAGTCTTTTAATGCGCTTCTTAATCTTCTTATTGATCATTGTATGTTTTGTGAGGCTAATGATGCTTTTGATCGTTCTTATGAAATGGGTTTTCGTCCGAATACTGTTACGTTTAATATTATGATAAAGGGTTGGTTGGTGAAAGGTGAATGGGGGAAAGCATGTgaggtgtttgatgaaatgcttCAGAAGAAAGTGCAACCTAGTGTTGTTACTTATAATAGTCTTATTGGGTTTTTGTCTAGAAAAGGTGATTTGGATAAAGCGATGACGTTGGTTGATGATATGAGACGTAAAGGAAAACGTGCGAATGGAGTGACGTATGCGCTTTTGATGGAGGGTTTGTGCTCTATGGGGAAGTATGAGGAAGCTAAGAAGCTAATGTTTGATATGGCGTATCGTGGATGTAAACCTCAGCTTGTGAATTTTTCTGTTTTGATGAATGATCTTGGAAAGAGGGGTATGATTGATGAGGCGATGGTTTTATTCCGTGAGATGAGAAAGAGGCGGCTTAAGCCGGACGTTGTGACATACAATGTATTTGTGAATTATCTTTGCAAGGAAGGTAAGACGGCGGAAGCTTACAAAATGTTAGTTGAGATGCAGATTGGTGGTTGCCAGCCAAATGCAGCTACATATAGGATGATGCTTGATGGTTTGTGTCGGAATGGGGATTTTGAGGGAGGGTTGAATGTTTTGAATGCAATGATGGCTAGTAGGCACTGCCCGCGACCCGATACATTTAATTGTTTGGTTGTTGGGTTATTGAAGTCTGGGAATATTGATGGTGGATGCTTTGTTTTGGAAGAGATGGTGAAGAGAAAGGTAGATTTTGAATTGGAGAGCTGGGAAGCAGTGATAAAATATGCTTGTAGTGAGGATGATAATGGTGGCAGTAGGCTTAGGACTATACTTGCATCTCAGTCCATCTAA 1056 0.3883 MKETNVQCNETLFIALFQHYGPVKAIELFHKMPHFNCVRTLQSFNALLNLLIDHCMFCEANDAFDRSYEMGFRPNTVTFNIMIKGWLVKGEWGKACEVFDEMLQKKVQPSVVTYNSLIGFLSRKGDLDKAMTLVDDMRRKGKRANGVTYALLMEGLCSMGKYEEAKKLMFDMAYRGCKPQLVNFSVLMNDLGKRGMIDEAMVLFREMRKRRLKPDVVTYNVFVNYLCKEGKTAEAYKMLVEMQIGGCQPNAATYRMMLDGLCRNGDFEGGLNVLNAMMASRHCPRPDTFNCLVVGLLKSGNIDGGCFVLEEMVKRKVDFELESWEAVIKYACSEDDNGGSRLRTILASQSI 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g02025 351 SUPERFAMILY TPR-like 52 236 IPR011990 GO:0005515
Tsu02g02025 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Tsu02g02025 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 110 144 IPR002885 -
Tsu02g02025 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Tsu02g02025 351 Gene3D Tetratricopeptide repeat domain 243 347 IPR011990 GO:0005515
Tsu02g02025 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 250 284 IPR002885 -
Tsu02g02025 351 Pfam Pentatricopeptide repeat domain 133 194 IPR002885 -
Tsu02g02025 351 Pfam PPR repeat family 74 118 IPR002885 -
Tsu02g02025 351 Pfam PPR repeat family 214 263 IPR002885 -
Tsu02g02025 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Tsu02g02025 351 PANTHER OS05G0548600 PROTEIN 2 347 - -
Tsu02g02025 351 Pfam PPR repeat 288 316 IPR002885 -
Tsu02g02025 351 TIGRFAM PPR: pentatricopeptide repeat domain 112 141 IPR002885 -
Tsu02g02025 351 TIGRFAM PPR: pentatricopeptide repeat domain 217 251 IPR002885 -
Tsu02g02025 351 TIGRFAM PPR: pentatricopeptide repeat domain 77 110 IPR002885 -
Tsu02g02025 351 TIGRFAM PPR: pentatricopeptide repeat domain 184 216 IPR002885 -
Tsu02g02025 351 TIGRFAM PPR: pentatricopeptide repeat domain 147 179 IPR002885 -
Tsu02g02025 351 TIGRFAM PPR: pentatricopeptide repeat domain 253 284 IPR002885 -
Tsu02g02025 351 TIGRFAM PPR: pentatricopeptide repeat domain 288 317 IPR002885 -
Tsu02g02025 351 Gene3D Tetratricopeptide repeat domain 123 242 IPR011990 GO:0005515
Tsu02g02025 351 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 249 IPR002885 -
Tsu02g02025 351 Gene3D Tetratricopeptide repeat domain 1 122 IPR011990 GO:0005515
Tsu02g02025 351 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 2 347 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g02025 44 336 Glycosyltransferase AT1G05670 25.085 5.22e-24 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g02025 - - gmx:100776556 551.206