Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01721 atgtcaataacCCAAAACCTCACCATTtcaatctcttcttcttcctctccttTCTTAGCTCCTTCCAATTTCAATTCCAGGAGTCAGCTATCATTGAATGCCAAGAGCGTTAGCATTTGTAAATGCGTTGCTACACCCCAAGAAGCTGAGACTGCCTACAAGACAAGGGTCTCGCGCAATGAAAACATGGGTAAACTTCAAGCTGGTTATCTCTTTCCTGAGattGCTAGAAGAAAGTCTGCACACTTGCTGAAGTACCCTGATGCGAAAATCATAAGCCTTGGGATTGGTGATACTACTGAACCCATTCCTGAAGTCATAACTTCTGCATTGGCAAAGAAATCACATGCACTATCAACACTAGAAGGATATAGTGGTTATGGAGCTGAACAGGGTGAAAAGCCATTAAGAAGTGCAATTGCTTCAACATTTTACCCTGATCTTGGCATCGAAGATGATGATATATTTGTCTCAGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTTGGTTCGAATGTGAAAATGGCTGTGCAGGATCCATCATACCCGGCCTATGTAGACTCAAGTGTAATTATGGGCCAGACTGGTCTATACCAGAAGGACGTTCAGAAGTTTGCAAACATTGAGTACATGAGGTGTAATCCAGAAAATGGTTTCTTCCCTGATTTGTCATCTCTTTCTCGACCAGATATCATATTTTTCTGTTCTCCAAACAATCCTACTGGTGCTGCAGCAACAAGGGAGCAACTGGTCCAACTAGTTCGGTTTGCTAAGGACAATGGATCTATAATAGTATATGACTCGGCGTATGCTATGTATATTTCTGGCGACAACCCGCGCTCCATCTTTGAAATTCCTGGAGCCAAAGAGGTTGCCATTGAAACTTCATCATTTAGCAAGTATGCTGGGTTCACTGGAGTTCGTCTGGGTTGGACTGTGGTTCCAAAGCAGTTGCTGTTTTCTGATGGATTTCCCGTTGCCAAGGATTTCAACCGTATCGTATGTACTTGTTTCAATGGTGCATCAAATATTTCCCAGGCTGGTGGTCTTGCCTGCCTTTCACCAGAAGGTCTTAAGGCTATGCGTGGGGTTATTGGATTCTACAAAGAAAATACTAACATAATAGTGGACACATTTGATTCTCTCGGGTTTAAAGTGTATGGAGGGAAAAGTGCACCGTATGTGTGGGTCCACTTCCCAGGCCAAAATTCATGGGATGTATTCAGTGAGATTCTTGAGAAGACACACGTGGTTACAACTCCTGGCAGTGGTTTTGGACCCGGTGGGGAAGGTTTTGTCAGGGTTAGTGCCTTTGGTCACAGGGAAAATGTCTTGGAGGCCTGCAGAAGATTCAAGCAGCTATACAAGTGA 1380 0.4261 MSITQNLTISISSSSSPFLAPSNFNSRSQLSLNAKSVSICKCVATPQEAETAYKTRVSRNENMGKLQAGYLFPEIARRKSAHLLKYPDAKIISLGIGDTTEPIPEVITSALAKKSHALSTLEGYSGYGAEQGEKPLRSAIASTFYPDLGIEDDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVQKFANIEYMRCNPENGFFPDLSSLSRPDIIFFCSPNNPTGAAATREQLVQLVRFAKDNGSIIVYDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVVPKQLLFSDGFPVAKDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMRGVIGFYKENTNIIVDTFDSLGFKVYGGKSAPYVWVHFPGQNSWDVFSEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACRRFKQLYK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01721 459 Hamap LL-diaminopimelate aminotransferase [dapL]. 58 457 IPR019942 GO:0008483
Tsu02g01721 459 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 58 456 IPR019942 GO:0008483
Tsu02g01721 459 Gene3D Aspartate Aminotransferase, domain 1 71 455 IPR015422 GO:0003824
Tsu02g01721 459 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC 9 459 - -
Tsu02g01721 459 CDD AAT_like 92 456 - -
Tsu02g01721 459 Gene3D - 101 358 IPR015421 GO:0003824
Tsu02g01721 459 PANTHER AMINOTRANSFERASE 9 459 IPR019942 GO:0008483
Tsu02g01721 459 Pfam Aminotransferase class I and II 90 454 IPR004839 GO:0009058|GO:0030170
Tsu02g01721 459 SUPERFAMILY PLP-dependent transferases 70 454 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01721 Tsu-Chr2 15140910 15146433 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01721 K10206 - gmx:100801405 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01721 02 15140910 15146433 Tsu02g01721 02 15140910 15146433 ECH