Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01715 ATGGAAGCACATGCAGCTGGAGGAGCCAATCAGAGGATTGCAAGAATCTCTGCTCATCTTCATCCTCCAAATTTCCAGGAAGGAGGTGATGTTGCAATTAACAAAGCTAACTGCAGAGCGAAAGGTGGGGCGCCTGGATTCAAAGTAGCAATCTTGGGGGCTGCTGGTGGAATTGGTCAATCCCTTTCTTTGCTGTTGAAGATTAATCCATTGGTTTCTGTTCTTCATCTTTATGATGTTGTCAACACTCCTGGTGTCACTGCTGATGTTAGTCACATTGACACTGGTGCTGTGGTTCGTGGCTTTCTAGGACAGGGGCAACTTGAGAATGCACTTACAGGCATGGACTTGGTCGTTATACCTGCTGGTGTGCCGAGGAAACCTGGAATGACAAGGGATGACTTATTTAAGATAAATGCTGGAATTGTGAAGACTCTGTGTGAAGGAATTGCCAAGAGCTGTCCTAATGCAATTGTCAACTTGATTAGCAATCCAGTGAATTCCACTGTGCCAATTGCTGCTGAGGTCTTCAAGAAAGCTGGTACATATGATCCAAAGCGACTTTTAGGGGTTACAACCCTCGATGTTGCGAGGGCAAATACTTTTGTGGCAGAAGTACTTGGTGTTGATCCAAGAGAGGTTGATGTTCCAGTGGTAGGAGGTCATGCAGGAGTCACGATATTACCTCTCTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACCGAATACCTGACAAATCGCATTCAAAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGCTGGTTCGGCAACACTATCAATGGCATATGCAGCTGCTAAGTTTGCTAACTCATGCCTCCGCGGTTTGAAAGGAGAAGCCGGGATAGTGGAGTGTGCTTATGTTGATTCTCAGGTTACAGAACTTCCTTTCTTTGCAGCCAAGGTTCGTCTTGGTCGTGGTGGAGCAGAAGAGATATATCAACTTGGTCCCCTTAATGAGTATGAGAGGATTGGGCTGGAAAAGGCGAAGAAAGAGTTAGCGGGAAGCATCCAGAAGGGAGTAGAATTCATCAAAAAATAA 1077 0.4587 MEAHAAGGANQRIARISAHLHPPNFQEGGDVAINKANCRAKGGAPGFKVAILGAAGGIGQSLSLLLKINPLVSVLHLYDVVNTPGVTADVSHIDTGAVVRGFLGQGQLENALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKSCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFANSCLRGLKGEAGIVECAYVDSQVTELPFFAAKVRLGRGGAEEIYQLGPLNEYERIGLEKAKKELAGSIQKGVEFIKK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01715 358 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 48 357 IPR010097 GO:0006099|GO:0030060
Tsu02g01715 358 PANTHER MALATE DEHYDROGENASE 2, PEROXISOMAL 8 358 - -
Tsu02g01715 358 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 192 356 IPR022383 GO:0016616
Tsu02g01715 358 Pfam lactate/malate dehydrogenase, NAD binding domain 48 190 IPR001236 GO:0016491
Tsu02g01715 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 47 190 IPR036291 -
Tsu02g01715 358 PIRSF Lac_mal_DH 46 356 IPR001557 GO:0016616|GO:0019752
Tsu02g01715 358 Gene3D - 39 191 - -
Tsu02g01715 358 ProSitePatterns Malate dehydrogenase active site signature. 191 203 IPR001252 GO:0006108|GO:0016615
Tsu02g01715 358 CDD MDH_glyoxysomal_mitochondrial 47 356 IPR010097 GO:0006099|GO:0030060
Tsu02g01715 358 Gene3D - 192 358 IPR015955 GO:0003824|GO:0016616
Tsu02g01715 358 SUPERFAMILY LDH C-terminal domain-like 191 357 IPR015955 GO:0003824|GO:0016616
Tsu02g01715 358 PANTHER MALATE AND LACTATE DEHYDROGENASE 8 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01715 Tsu-Chr2 15070889 15073886 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01715 K00026 - gmx:100170735 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01715 02 15070889 15073886 Tsu02g01715 02 15070889 15073886 ECH