Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01712 ATGACTTCATCGGAGATCGAAGTTGTATCATCGGACTCCAAACCCcaacaacagcagcaacaacaacctcctATACTCGACGTTTTCACTGCTTCTATCCATGGTGACTTGCAAAAATTGAGAACCTTCGTTGAACAAGATGGTGCCTCCGTTTCTCTTCCTGATATTAATGGCTATTATGCTCTTCAATGGGCTTCTCTCAACAACTTCCATGACATTGTTTACTATCTTATTCAGCATGGTAGTAATGTCAATGCTAAAGACAATATGCAACAAACGGCTTTACATTGGGCAGCAGTTCGCGGGTCAATTGCAGCAGCTGATGTGCTCTTGGAGAATGGTGCTAGGGTTGAAGCTTCTGATATAAATGGATACCGGGCAGTTCACGTTGCTGCACAATATGGACAGACAGCTTTCTTAAATCACATTGTTGTAAAATACCATGCTGATTTTGATGTGCCTGATAATGACGGAAGGAGTCCTCTCCATTGGGCTGCATATAAAGGATATGCTGATGCAATAAGATTACTTCTATTTAGAGATGCAAGTCAAGGAAGACAAGATAAAGATGGTTGTACCCCATTGCATTGGGCAGCATTAAGAGGACATTCAGAGGCGTGTGCTGTGCTTGTGCATGCTGGGACGAAGGAAGAATTGACGGTGAAGGACAATGCAGGATTCACTCCTGTACAGCTTGCATTCGATAAAGGTCATCGACATGTCGCCCCTTTCCTTTCTAATCAGCAACGGTCTCATAGCAACCCCTGGAGACGCAAACTTTATTGTGGGATGGTAACAGATATTGGTTATGCTCCCATTTTAGTGTTTGTTATAGTCTCTCTCTCGATCCTCTTCGTCCATTCAGTTGTTGCAGCTCCTAACCTTAAAAAGATAACCGCCGCTGTTGGATTTTGGTCATGGATAGCTATCTCTTCATCTGCTGCTTCCTTGGTTATGTTTTATAGGTGTAGTAGTAAAGATCCAGGTTATATAAAACGGCCAGGAGAGATGGGTACTCTAAGCGATACAGAGGATCCTTTGTTGAATATTGAGCTGAATAGTTCCTCTGTTTGGATGGGAAATTGGTCTCAACTTTGCCCCACCTGCAAGATAATAAGACCTGTCCGGTCTAAGCATTGCCCTACTTGTAAGCGTTGTGTAGAGCAGTTTGACCACCATTGTCCATGGATATCTAATTGTGTTGGGAAGAGGAACAAAAgggatttctttatttttatctgCTTGGGAACTATAACTGCTTCTTCCAGTGCCATCGTTGCAATTCATAGAATTTGGACATCAATACCAGCTTTACCGGCAGGAGAAACATGGATCCATCAGGTATTAGTAAGACATCCAGGTCTTGTTGCATTTTTGGTGATGGATGCTGTTGTCTTCGTTGCAACTACAACTTTGACAGTAACACAGGCTTCCATGATAGCACGAAATGTGACCACAAACGAATTAGCAAATTCCTCACGGTATGAGTATCTTCGCGGTCCTGATGGGCGGTACAGAAACCCATATAATCGTGGTTGGTGGAAGAACTGTGCTGATTTCCTTTTTCTGGGCCATACAGACGATGATGATATTGCTTGGCCTCCATTACAGCAGGTGGCTACTTAG 1626 0.4207 MTSSEIEVVSSDSKPQQQQQQQPPILDVFTASIHGDLQKLRTFVEQDGASVSLPDINGYYALQWASLNNFHDIVYYLIQHGSNVNAKDNMQQTALHWAAVRGSIAAADVLLENGARVEASDINGYRAVHVAAQYGQTAFLNHIVVKYHADFDVPDNDGRSPLHWAAYKGYADAIRLLLFRDASQGRQDKDGCTPLHWAALRGHSEACAVLVHAGTKEELTVKDNAGFTPVQLAFDKGHRHVAPFLSNQQRSHSNPWRRKLYCGMVTDIGYAPILVFVIVSLSILFVHSVVAAPNLKKITAAVGFWSWIAISSSAASLVMFYRCSSKDPGYIKRPGEMGTLSDTEDPLLNIELNSSSVWMGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKRNKRDFFIFICLGTITASSSAIVAIHRIWTSIPALPAGETWIHQVLVRHPGLVAFLVMDAVVFVATTTLTVTQASMIARNVTTNELANSSRYEYLRGPDGRYRNPYNRGWWKNCADFLFLGHTDDDDIAWPPLQQVAT 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01712 541 SUPERFAMILY Ankyrin repeat 29 247 IPR036770 -
Tsu02g01712 541 ProSiteProfiles Ankyrin repeat region circular profile. 90 121 - -
Tsu02g01712 541 Pfam Ankyrin repeats (3 copies) 35 121 IPR002110 GO:0005515
Tsu02g01712 541 Pfam Ankyrin repeats (many copies) 159 210 IPR002110 GO:0005515
Tsu02g01712 541 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g01712 541 Pfam DHHC palmitoyltransferase 364 491 IPR001594 GO:0016409
Tsu02g01712 541 ProSiteProfiles Ankyrin repeat profile. 190 222 IPR002110 GO:0005515
Tsu02g01712 541 ProSiteProfiles Ankyrin repeat region circular profile. 57 89 - -
Tsu02g01712 541 ProSiteProfiles Ankyrin repeat profile. 123 156 IPR002110 GO:0005515
Tsu02g01712 541 ProSiteProfiles DHHC domain profile. 364 414 - -
Tsu02g01712 541 SMART ANK_2a 190 221 IPR002110 GO:0005515
Tsu02g01712 541 SMART ANK_2a 157 186 IPR002110 GO:0005515
Tsu02g01712 541 SMART ANK_2a 57 86 IPR002110 GO:0005515
Tsu02g01712 541 SMART ANK_2a 225 254 IPR002110 GO:0005515
Tsu02g01712 541 SMART ANK_2a 123 153 IPR002110 GO:0005515
Tsu02g01712 541 SMART ANK_2a 90 119 IPR002110 GO:0005515
Tsu02g01712 541 ProSiteProfiles Ankyrin repeat profile. 157 189 IPR002110 GO:0005515
Tsu02g01712 541 PANTHER - 3 530 - -
Tsu02g01712 541 ProSiteProfiles Ankyrin repeat region circular profile. 190 214 - -
Tsu02g01712 541 ProSiteProfiles Ankyrin repeat profile. 57 89 IPR002110 GO:0005515
Tsu02g01712 541 ProSiteProfiles Ankyrin repeat region circular profile. 157 183 - -
Tsu02g01712 541 PANTHER PROTEIN S-ACYLTRANSFERASE 24 3 530 - -
Tsu02g01712 541 Gene3D - 1 142 IPR036770 -
Tsu02g01712 541 Gene3D - 143 276 IPR036770 -
Tsu02g01712 541 ProSiteProfiles Ankyrin repeat profile. 90 122 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01712 Tsu-Chr2 15054225 15061780 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01712 35 258 Miscellaneous Gene Families AT2G31820 25.641 5.93e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01712 K20032 - gmx:100807263 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01712 02 15054225 15061780 Tsu02g01712 02 15054225 15061780 ECH