Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01197 ATGTTTGCTGCTGGCCTTTGGTGGTCTTGGCGGAATAGAAATGCATCTTGCCTATCCAATATAAATCTTTCAATTCATCACCTTAAAATGGAGGCCCAAAACTTATCTACTACCTTCAACATTTGCTTTCCTCCTCCCAATTCCAGCACTCGGGATGACAGAGTTGGGTTTGGTGGTCTTCTTCGATCTTCAGCAGGAAATTGGATTAGAGGTTACTCTGGTTATATTCCCCACTCTTCGAAAATTCTTTATGCTGAATTAACTGCTTTATTCCATGGACTCAGTCTAGCAAGATTTATGAACTTTACTGATGTGATTTGCTATTCAGGTTCACTTCTCTGTGTTAAGATCCTTCATGAGCCAACTGCTAAGTTCCATAAGTATGCAGCGTTGATTCAAGACATAAAGGATTTAATCCACCAAGATTGGTTGTTCCATCTTTCTCATACCCTTCGGGAAGGCAACAATTGTGGTGATTATTTAGCTAAATTAAGCACTTCTTCCAATGATGAGCTTCTCATCCACATTAACTCACTTTCGAGGATCAAGGATCTTCTCTTTGCAGACTCTTGCGGAATATGGTTCCGATTAATCGGAGCATTACTTTTCATAACAACAATACTCCAAACCTCAGACAATACCTTATTATGTTCATTCACCCGAACCAAACTCCAAACCACAAACCAAAACACAAACCCAACACCGATCCAGCTTCGTGCGATCCTTCATTACGCAACCTCACGCGTTGTTCCACAACAATCCATCCATGAAATCACCGTTACCTTAGACGTAATCAAATCGTTAAATCGCCCTTTCAACTTCCTTGTTTTCGGTTTGGGCCATGATTCACTTATGTGGGCCGGGTTTAACCCATTAGGAAAAACCGTTTTCCTTGAAGAAGATCCGAAATGGGTTCAAACCGTTCTTAAAGACGCACCGGAGTTAAAAGCGATAACCGTTAATTACCGGACTCAGCTTCAACAAGCCGATGATCTTCTCAAAACGTATAGATCCGAACCGGCTTGTTCTCCGGCGAAAGCTACGTTACGTGGAAACGAGAAATGTAAGCTAGCACTTGAGAATCTTCCTGATGAGATTTATAATACTGAATGGGATTTGATAATGATCGATGCTCCGAGAGGATATTTTGCGGAGGCGCCGGGGAGAATGGCGGCgattttttcaatgaatattATGGCGAGGAATAGGAAAAGTTCCGGTGTGACGCACGTGTTTTTGCACGATGTGGATCGGAAAGTTGAGAAGGTTTTTGCTGAAGAGTTTCTTTGTAAGAAGAATTTGGTGAAAGGTGTTGGTAGACTTTGGCATTTTGAAATTGCTTCTGTTGCTGCTAATTACACTAGTGATGCTAgttattgttaa 1383 0.4107 MFAAGLWWSWRNRNASCLSNINLSIHHLKMEAQNLSTTFNICFPPPNSSTRDDRVGFGGLLRSSAGNWIRGYSGYIPHSSKILYAELTALFHGLSLARFMNFTDVICYSGSLLCVKILHEPTAKFHKYAALIQDIKDLIHQDWLFHLSHTLREGNNCGDYLAKLSTSSNDELLIHINSLSRIKDLLFADSCGIWFRLIGALLFITTILQTSDNTLLCSFTRTKLQTTNQNTNPTPIQLRAILHYATSRVVPQQSIHEITVTLDVIKSLNRPFNFLVFGLGHDSLMWAGFNPLGKTVFLEEDPKWVQTVLKDAPELKAITVNYRTQLQQADDLLKTYRSEPACSPAKATLRGNEKCKLALENLPDEIYNTEWDLIMIDAPRGYFAEAPGRMAAIFSMNIMARNRKSSGVTHVFLHDVDRKVEKVFAEEFLCKKNLVKGVGRLWHFEIASVAANYTSDASYC 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01197 460 PANTHER OS11G0490100 PROTEIN 196 452 IPR006514 GO:0045492
Tsu02g01197 460 Pfam Reverse transcriptase-like 52 163 IPR002156 GO:0003676|GO:0004523
Tsu02g01197 460 SUPERFAMILY Ribonuclease H-like 52 166 IPR012337 -
Tsu02g01197 460 TIGRFAM A_thal_3515: uncharacterized plant-specific domain TIGR01627 239 452 IPR006514 GO:0045492
Tsu02g01197 460 Pfam Polysaccharide biosynthesis 257 444 IPR021148 -
Tsu02g01197 460 CDD RNase_H_like 54 163 IPR044730 -
Tsu02g01197 460 Gene3D - 46 166 IPR036397 GO:0003676
Tsu02g01197 460 PANTHER POLYSACCHARIDE BIOSYNTHESIS PROTEIN 196 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01197 Tsu-Chr2 10020875 10024089 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01197 - - pvu:PHAVU_002G173400g 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01197 02 10020875 10024089 Tsu02g01197 02 10020875 10024089 ECH
Tsu07g02696 07 31590081 31591290 Tsu02g01197 02 10020875 10024089 PCT