Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00895 ATGCATCAACTTGAAGAACTACTCATTATCTTTCTTCCATTCCTCATCGGTTTAATCCTAACATTAAAAACCTTCATCTCATTCACCACATGGATCTTCAACACGTGTCTCCGATCTGAAAAACAATTCACCAAATCCTACGGTTCATGGGCGTTAATCACCGGAGCAACCGACGGAATCGGAAAAGCCTTATCCTATCAACTAGCACAAAAAAATCTCAACCTAATTCTCGTAAGTAGAAACTCAAAAAAACTCGAAACAGTTAAAAACGAAATCACAATCAAAAATCCTCACATTCAAATCAAAACCGTCACAATCGACTTTTCCGACGACTTCACCACCGGTGTTCGAGAAATAGAAATTTTGGCGCGAGATTTAGATCTTGGAATTTTGATCAATAACGTTGGGATTACTTATCCAAAGGCTATGTTCTTTGATGAAGTGAAAGAGGAAATGTGGATGAAGATTGTTAGAGTGAATATTGAGAGTACAACGAGAGTAACGAAAGCGGTTTTGGGTGGAATGATGGAAAGGAAGAAGGGTATAATCGTAAATATTGGTTCTGGTGCTGCTGTGGTTGTGCCTTCGCATCCTCTGTTCACAATTTATGCTGCAACTAAAGCTTATGTAGATCAGTTTTCAAGATCTCTATATACGGAGTACAAACAATATGGAATCCACGTGCAATGTCAgGTACCATTATATGTTGCAACAAACATGGTATCAAGGGTAGCATCTATTGGGAGAGATTCTTTATTCATACCAACACCTGAAGGTTATGCAAGAGCTGCTATTCGTAAAATTGGATATGAACAAAGGTGCACACCTTATTGGGCTCACTCAATTCAGTGGACCTTTGCACGTCTAATCCCTGACCTACTTCTTGATTATTGGCGTATGTCTATTGGTTTGCGACGTAGGAATCAAGTGGATTAG 936 0.391 MHQLEELLIIFLPFLIGLILTLKTFISFTTWIFNTCLRSEKQFTKSYGSWALITGATDGIGKALSYQLAQKNLNLILVSRNSKKLETVKNEITIKNPHIQIKTVTIDFSDDFTTGVREIEILARDLDLGILINNVGITYPKAMFFDEVKEEMWMKIVRVNIESTTRVTKAVLGGMMERKKGIIVNIGSGAAVVVPSHPLFTIYAATKAYVDQFSRSLYTEYKQYGIHVQCQVPLYVATNMVSRVASIGRDSLFIPTPEGYARAAIRKIGYEQRCTPYWAHSIQWTFARLIPDLLLDYWRMSIGLRRRNQVD 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00895 311 Pfam short chain dehydrogenase 50 244 IPR002347 -
Tsu02g00895 311 PRINTS Glucose/ribitol dehydrogenase family signature 224 241 IPR002347 -
Tsu02g00895 311 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Tsu02g00895 311 PRINTS Glucose/ribitol dehydrogenase family signature 126 137 IPR002347 -
Tsu02g00895 311 PRINTS Glucose/ribitol dehydrogenase family signature 175 191 IPR002347 -
Tsu02g00895 311 PRINTS Glucose/ribitol dehydrogenase family signature 50 67 IPR002347 -
Tsu02g00895 311 CDD 17beta-HSD1_like_SDR_c 48 291 - -
Tsu02g00895 311 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 10 309 - -
Tsu02g00895 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Tsu02g00895 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 126 137 IPR002347 -
Tsu02g00895 311 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 181 189 IPR002347 -
Tsu02g00895 311 PANTHER RH59310P 10 309 - -
Tsu02g00895 311 PIRSF 11-beta-HSD1 2 310 - -
Tsu02g00895 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 48 302 IPR036291 -
Tsu02g00895 311 Gene3D - 42 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00895 Tsu-Chr2 7498460 7502519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00895 15 308 Lipid Metabolism Gene Families AT1G24470 57.288 6.76e-122 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00895 K10251 - tcc:18609647 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00895 02 7498460 7502519 Tsu02g00895 02 7498460 7502519 ECH