Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00890 ATGAAGCTACTGTCGTGGCTAGACACATGCAGCTCCTCAGCCAACTGCGCCACCTCTAAACAAAGCTCAACCATTTCACTCCCAATCACAAAACATGCATCAGACTCAAGCACTTCTTCTTCTCCAACGTTAACCTCTGATGATAGCACCTCAACTCTTTACACCAACTACTCAATACAAACACTCCCATCCATTCCATCTCTCCAGAAACTGTCTCTCTCCCCACAAAATCTCAACAATTTCTCAATCTCCTATACATGCCTCACCTCTCTCACACCACATCCTTCTCGTCCAATAACCTCCCTCGCCATCCACAACAACCTCCTCTACGCCGCAACAGAAAACCAAATCAACGTCTACGATCGTCACACGTGTAACAATCTCCACACGTTTAACTCCAATTCAACTTCCTCTGGCTCAACCAAAACCATCACGTTCTCAAATGACATGGTATTCACCACTCACCAAGATTGCAAGATCCGTGTCTGGCAAAAACCAAAAccacaaaacaacaacaaccaccgcAAGTTAACCGTTCTTCCAACCGTCAACGATCGTCTCCGTCGTTTTCTTCTCCCGAAAAACTACGTAACCGTCCGTCGACATAACAAACGTCTCTGGATTGAACACGCCGACGCCGTAACCGATCTCGCCGTTTCTAACGGCGTAATCTACTCCGTTTCGTGGGATAAAACATTGAAAATCTGGAGTATCTCTGATCTTCGTTGCGTTGAATCCGTTAAAGCTCATGAAGATGCGGTTAACGCGGTTGCAGTTTCTAACGATGGAACTGTTTATACTGGATCATCCGATAAACGAATTCGGGTTTGGGCGAAACCCGTTGGAGAAAAACGGCACGTGCTAGTTGCGACTTTGGAAAAGCATAAATCAGCGGTTAATGCTTTAGCATTAAACGACGACGGTTCGGTGTTATTTTCGGGTGCTTGTGACCGTTCGATATTGGTATGGGAAAGAGAGGATAGTGCGAATCATATGGTTGTGAGTGGAGCTTTGAGAGGGCATCAGAAAGCCATACTTTGTTTGATCAACGTCTCTGATTTGTTACTTAGTGGATCAGCTGATCGAACGGTTAGGATTTGGAAGCGTGCTTCTGATGGATCGTTTTGTTGTGTTGGTGTTCTTGATGGTCATAGGAAACCTGTGAAGTCTTTGGCGGCAATTACTGAGTATGATGAAGAAAGTCAAAGTTCATCTAACGGTGTCGTTTCTGTTTTTAGTGGTTCGTTAGATGGTGAAATAAAGGTTTGGCAACTTTCTATGAATTGTTTGACCATTCAGGATCAAGATATTTTGAATTTCTAG 1323 0.4339 MKLLSWLDTCSSSANCATSKQSSTISLPITKHASDSSTSSSPTLTSDDSTSTLYTNYSIQTLPSIPSLQKLSLSPQNLNNFSISYTCLTSLTPHPSRPITSLAIHNNLLYAATENQINVYDRHTCNNLHTFNSNSTSSGSTKTITFSNDMVFTTHQDCKIRVWQKPKPQNNNNHRKLTVLPTVNDRLRRFLLPKNYVTVRRHNKRLWIEHADAVTDLAVSNGVIYSVSWDKTLKIWSISDLRCVESVKAHEDAVNAVAVSNDGTVYTGSSDKRIRVWAKPVGEKRHVLVATLEKHKSAVNALALNDDGSVLFSGACDRSILVWEREDSANHMVVSGALRGHQKAILCLINVSDLLLSGSADRTVRIWKRASDGSFCCVGVLDGHRKPVKSLAAITEYDEESQSSSNGVVSVFSGSLDGEIKVWQLSMNCLTIQDQDILNF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00890 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 368 IPR001680 GO:0005515
Tsu02g00890 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 292 324 - -
Tsu02g00890 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 277 IPR001680 GO:0005515
Tsu02g00890 440 PANTHER F21J9.19 18 428 - -
Tsu02g00890 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 292 333 IPR001680 GO:0005515
Tsu02g00890 440 SUPERFAMILY WD40 repeat-like 84 426 IPR036322 GO:0005515
Tsu02g00890 440 Pfam WD domain, G-beta repeat 337 368 IPR001680 GO:0005515
Tsu02g00890 440 Pfam WD domain, G-beta repeat 242 277 IPR001680 GO:0005515
Tsu02g00890 440 Pfam WD domain, G-beta repeat 376 423 IPR001680 GO:0005515
Tsu02g00890 440 Pfam WD domain, G-beta repeat 289 323 IPR001680 GO:0005515
Tsu02g00890 440 PRINTS G protein beta WD-40 repeat signature 411 425 IPR020472 -
Tsu02g00890 440 PRINTS G protein beta WD-40 repeat signature 355 369 IPR020472 -
Tsu02g00890 440 PRINTS G protein beta WD-40 repeat signature 224 238 IPR020472 -
Tsu02g00890 440 Gene3D - 73 188 IPR015943 GO:0005515
Tsu02g00890 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 277 - -
Tsu02g00890 440 Gene3D - 198 285 IPR015943 GO:0005515
Tsu02g00890 440 Gene3D - 286 437 IPR015943 GO:0005515
Tsu02g00890 440 SMART WD40_4 200 237 IPR001680 GO:0005515
Tsu02g00890 440 SMART WD40_4 374 424 IPR001680 GO:0005515
Tsu02g00890 440 SMART WD40_4 124 164 IPR001680 GO:0005515
Tsu02g00890 440 SMART WD40_4 285 324 IPR001680 GO:0005515
Tsu02g00890 440 SMART WD40_4 84 121 IPR001680 GO:0005515
Tsu02g00890 440 SMART WD40_4 240 278 IPR001680 GO:0005515
Tsu02g00890 440 SMART WD40_4 331 368 IPR001680 GO:0005515
Tsu02g00890 440 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 18 428 IPR045182 -
Tsu02g00890 440 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 368 - -
Tsu02g00890 440 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 246 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00890 Tsu-Chr2 7462003 7463348 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00890 241 424 Acyl Lipid Metabolism Gene Families AT3G18860 26.316 5.66e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00890 - - gmx:100817776 598.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00890 02 7462003 7463348 Tsu02g00890 02 7462003 7463348 ECH