Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00887 atggcTATGTGGCGGTGCATGGTGATTTTCATGAATATTATATTGATCGGAGCAACCATATTGGAGCTGAAACCAGTGGTTGCGGTGGTGAATGGTGTTCCACTTAAAACAAGTTCAAGATGGATTGTGAATGAAAATGGAgaaagggtaaaattggcatGTTTAAATTGGGTGTCACATTTAGATGTTGTTGTAGCTGAAGGGCTTAGTAAAAAGCCCGTGGGTGTTATTTCTAATGGAATAAAGTCTATGGGCTTTAACTGTGTTAGGCTTACTTGGCCTATTCTTCTTCTAACTAATGAAACTCTTTCTTCTCTTACGGTTAGAAAATCATTTCAGAATCTTGGTTTACTTGAATCTATTGCTGGTTTTCAATCCAATAATCCTTCTATTATTGATGTTTCCCTCATTCAAGCTTTTCAGGCAGTTGTGAAAAATCTTGGAGATAACAATGTGATGGTGATTTTGGACAACCATTTGACCCAACCAGGGTGGTGTTGTAGTGGTTCTGACGGTAATGGATTCTTTGGCGACCAATATTTCGACCCAAATTTATGGATCACGGGCCTCACCAAAATGGCCACTCTTTTCAGAGGAGTGACCAATGTGGTAGGTATGAGCTTGAGAAATGAACTCCGTGGTCCAAAACAGAATGTCGACGATTGGTACAGGTATATGGTGCAAGGAGCAGAAGCGGTTCATGCGGCAAATCCAGATGTTCTTGTAATTTTATCTGGATTAAATTTTGACAAAGACTTATCCTTCATTGCGAAAAGACCAGTGAGCCTAACATTCACAGGAAAACTAGTGTTTGAGGCACACTGGTATGGCTTCACTGATGGTCAAGCTTGGGTGTCAGGTAACCCAAATCAAGTATGTGGACAAGTGGCTGGAAATATGAAGAGAATGTCTGGCTATTTGGTTGATCAAGGATGGCCATTGTTTGTGAGTGAGTTCGGGGTGGACTTGCGGGGTACTAATGTCAATGATAACCGTTATCTTAACTGTTTTATAGCATATGCAGCTGAGCTTGATTTGGATTGGGCATTGTGGACATTGGTTGGTAGTTACTATTTTAGACAAGGGGTTATAGGAATGGAAGAGTTTTATGGGATTATCAATTGGGATTGGTCACAAGTTAGAAATGCTAGTTTCTTGCATAGGATTGCTTCCCTTCAACTTCCATTTCGAGGTCCAGGCATAACAGTAGGCAATCCACACAAACTGATTTTCCATCCTTTAACCGGTCTTTGCGTGATAAGAAAGTCAATGCTAGAGCCACTACAATTAGGTCCATGCTCTCTTTCTGATGGCTGGAACTACACACCACAGAAGGTATTATCAATAAAGGGTACATACTATTGCATACAAGCACAGAAAGAAGGGATGCCTGCAACACTTAGCATACTATGTTCAAATCCTAACTCTCAATGGGACATGATCTCAGACTCCAAATTGCACCTTTCATCAAAAACTAGCACTGGATCAACAAATGTTTGTCTGGATGTGAACGAAAAGAACGTCATTGTGACCAATGCGTGTAAATGCTTGAGCAACGATAAATCATGTGACCCTGCAAGTCAATGGTTTAAACTTATTGATAGCGGTAGGAGGTCAATTTCGTCAACCTCAACATTATCGGAGCTAAATTTATTGGAGCTTTTCACGACACCATATAACTcaaaataa 1689 0.3973 MAMWRCMVIFMNIILIGATILELKPVVAVVNGVPLKTSSRWIVNENGERVKLACLNWVSHLDVVVAEGLSKKPVGVISNGIKSMGFNCVRLTWPILLLTNETLSSLTVRKSFQNLGLLESIAGFQSNNPSIIDVSLIQAFQAVVKNLGDNNVMVILDNHLTQPGWCCSGSDGNGFFGDQYFDPNLWITGLTKMATLFRGVTNVVGMSLRNELRGPKQNVDDWYRYMVQGAEAVHAANPDVLVILSGLNFDKDLSFIAKRPVSLTFTGKLVFEAHWYGFTDGQAWVSGNPNQVCGQVAGNMKRMSGYLVDQGWPLFVSEFGVDLRGTNVNDNRYLNCFIAYAAELDLDWALWTLVGSYYFRQGVIGMEEFYGIINWDWSQVRNASFLHRIASLQLPFRGPGITVGNPHKLIFHPLTGLCVIRKSMLEPLQLGPCSLSDGWNYTPQKVLSIKGTYYCIQAQKEGMPATLSILCSNPNSQWDMISDSKLHLSSKTSTGSTNVCLDVNEKNVIVTNACKCLSNDKSCDPASQWFKLIDSGRRSISSTSTLSELNLLELFTTPYNSK 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00887 562 Gene3D Glycosidases 33 392 - -
Tsu02g00887 562 SUPERFAMILY (Trans)glycosidases 34 382 IPR017853 -
Tsu02g00887 562 PANTHER GLYCOSIDE HYDROLASE FAMILY 5 PROTEIN 10 549 - -
Tsu02g00887 562 SUPERFAMILY Ricin B-like lectins 405 532 IPR035992 -
Tsu02g00887 562 Pfam Cellulase (glycosyl hydrolase family 5) 79 353 IPR001547 GO:0004553|GO:0071704
Tsu02g00887 562 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 10 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00887 Tsu-Chr2 7445705 7449477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00887 34 542 Glycoside Hydrolase AT1G13130 60.429 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00887 - - gmx:100790415 895.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00887 02 7445705 7449477 Tsu02g00887 02 7445705 7449477 ECH