Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00886 atgcCTCTAGAGCTGGATACTTTTTTAGCTTCTGTTGTAGTTTTGTGTTTCTTTGCATTGATTCATGCATTAATGGGAAGTAAGAATTCAAAAGGGTCTCAAAGGAGACATGTAGTTTCACCATCAtcagcatcatcatcatatgGGTCTGttgattcttcatcttcttcatggGAAAATAACTATGGATATCCACAATCAACATATCCATATCCACAACCACAACAAAGTCCATATCAAAGACATAATCATCACCGCGCTGTACAGCACGATTATTCGCGGCCAAATAGGAAGTTAGATAGGAAATATTCAAGGATAGCTGATGATTATCATTCTCTTGATGAGGTTACTACTGCTCTTTCACATGCTGGCTTGGAATCTTCTAATCTCATTGTTGGGATTGATTTCACAAAGAGCAACGAATGGACAGGGAAAAGGTCGTTCAATCGAAAAAGTTTACATCACATCGGAAATGGTCAAAATCCTTACGAACAAGCAATCGCAATTATTGGGAAAACATTAAGTACTTTTGATGAGGATAACATGATTCCTTGTTTTGGATTTGGAgatgCATCAACACATGATCAAGACGTCTTCAGTTTCCATCCAGATGAGAGGTGCTGCAATGGATTTGAGGAAGTTTTGTCAAAATATAGAGAAATTGTTCCATGCCTCCGACTCGCAGGACCCACCTCATTTGCCCCGATTATTGAGATGGCCATGACTATTGTCGAGAAAAGTGGTGGCCAATATCATGTCTTGCTTATAATTGCCGATGGACAGGTGACAAGAAGTGTTGACACACAGCATGGCAAGTTAAGTTCACAGGAAAAGAAGACAATTGATGCAATTGTAAAAGCTAGCGAGTATCCACTGTCGATAGTTTTGGTTGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGACGATAACATCCCAGCTCGAGCCTTCGACAATTTTCAGTTTGTGAATTTTACAGAAATAATGTCAAAGAAAGTGGATTCGAACCGAAAAGAGACAGAGTTTGCTCTAGCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCACAGCTTATTGGGGACACGGAGGGGATACTCACCAGATAGGGTTCCTTTACCTCCACCACAATATGATAGGTCTTCTTCTAGCAATGCCGCAACGTCTTTTCGTTCAAACAGTTTTCAGCAAAGTACTCATACCAATGCGAGCAACAACAATGAAACGAACTCAGAACCATCTTCAAGTGGTTTATATGATAATAAgATTTGCCCAATTTGTCTTACTAATGGGAAGAATATGGCCTTCGGTTGCGGACATCAGACTTGTTGTGAATGTGGAGACAGCCTTGAATTCTGCCCTATTTGCCGGAGCACAATAGACACAAGAATAAAGCTTTATTAA 1419 0.3876 MPLELDTFLASVVVLCFFALIHALMGSKNSKGSQRRHVVSPSSASSSYGSVDSSSSSWENNYGYPQSTYPYPQPQQSPYQRHNHHRAVQHDYSRPNRKLDRKYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGNGQNPYEQAIAIIGKTLSTFDEDNMIPCFGFGDASTHDQDVFSFHPDERCCNGFEEVLSKYREIVPCLRLAGPTSFAPIIEMAMTIVEKSGGQYHVLLIIADGQVTRSVDTQHGKLSSQEKKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKKVDSNRKETEFALAALMEIPSQYKATIDHSLLGTRRGYSPDRVPLPPPQYDRSSSSNAATSFRSNSFQQSTHTNASNNNETNSEPSSSGLYDNKICPICLTNGKNMAFGCGHQTCCECGDSLEFCPICRSTIDTRIKLY 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00886 472 Pfam Copine 152 365 IPR010734 -
Tsu02g00886 472 MobiDBLite consensus disorder prediction 382 421 - -
Tsu02g00886 472 SUPERFAMILY vWA-like 128 311 IPR036465 -
Tsu02g00886 472 MobiDBLite consensus disorder prediction 370 421 - -
Tsu02g00886 472 MobiDBLite consensus disorder prediction 30 82 - -
Tsu02g00886 472 ProSiteProfiles Zinc finger RING-type profile. 429 462 IPR001841 -
Tsu02g00886 472 Pfam Zinc finger, C3HC4 type (RING finger) 426 467 - -
Tsu02g00886 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 472 IPR013083 -
Tsu02g00886 472 PANTHER RING-FINGER PROTEIN 25 472 - -
Tsu02g00886 472 SMART VWA_4 127 330 IPR002035 -
Tsu02g00886 472 MobiDBLite consensus disorder prediction 30 96 - -
Tsu02g00886 472 PANTHER COPINE FAMILY PROTEIN 1 25 472 - -
Tsu02g00886 472 SUPERFAMILY RING/U-box 423 468 - -
Tsu02g00886 472 CDD RING-HC_RGLG_plant 429 472 IPR045317 GO:0061630|GO:0070534
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00886 Tsu-Chr2 7439940 7443930 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00886 K16280 - gmx:100800161 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00886 02 7439940 7443930 Tsu02g00886 02 7439940 7443930 ECH