Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00882 ATGTATCACAGTGTCGGTGCACGGCGCCTATTATACCGTTCTCAAATATCTTACTACGTTAAAGCTGGTCTCATTGACACTGCAATCCAAGTGTTCGACGAAATGTCTCAATCAAATTCTCGTCCTTTCAGCATCGATTACAATCGTTTCATCGGCGTTCTCCTCCGTAACTCTCATCTTGACCTTGCCCATAACTACTACCACCGCCACGTCATCCCCAATGGTTTCTCTCTCACACCATTTACTTACTCACGTTTCATTTCCGCTCTTTGTTCCGTCAAAAACTTCTCCCTGATCGAGTCGCTTCTTCGTGATATGGATGCTCTTGGCTATGTTCCTGATATTTGGGcttttaatatttatcttaacATTCTCTGCCGCGAAAATCGGTTAGAAACTGCTCTTGAATTTTTTCGCATAATGCCTTTGAAGGGAAGAGAGCCTGATGTTGTTAGTTACACTATTATTGTTGATGCTTTGTGTAAAGCGAAAAGGTTTGATGAGGTTTCTCGTGTTTGGCGTAGTTTGATTGAGAGTGGGTTGAAGCCTGATTTAAAGGCTTGTGGTGCAGTTGTTGTTGGGTTGTGTAGTGCTGGTAAAGTTGATTTAAGTTATGAGCTTGTTATTGATGTGATTAAGGGTGGGGTTAAGGTTAATTGTTTGGTTTATAATGCTTTGATTAGTGGGTTTTGTAAGATTGGTGAGATTAAAAAGGCGTTGGAGATTAAGAGGTTTATGAGTAAGAATGGGTGTATGCCGGATTTGGTTACTTATAACATTTTGTTGAATTATTATTCTTGTGATGAGGTTATGCTTGACAAGGCTGTGAAGTTGGTGGAGACGATGGAGAGGAGTGGTTTGGAGCCTGATTTGTATAGTTATAATCAGTTGCTTAAGGGTTTTTGTAAGGCTAATCAGGTTGATAGGGCTTATTTGACTATGGTCAAGAAGATGCAGAGTAAAGGGGTATGCGATGTTGTTTCTTACAATACTATTATTTCGGCTTTTTGTAAGGCGCGGAAGACCGAGAGAGCTTACAAATTGTTTGAGGAAATGCATAGGAAAGGGATACAACCGGACGTGATAACGTTCACTGTACTCATAGAGGCATTTTTTAGGGAAGGTAGTTCTGGTTCAGACGTTGCCAAGAAGCTTCTTGATCAAATGACAGCGACGGGGATTGTTCCTGACGTAATATTCTATACCACAATATTTGATCATCTGTGCAAGTCCGGGAATATTGATATGGCTGTTGGTGTTTTTTGTGACATGGTGGAGAACGGAGTAAGTCCAGATGTGGTTTCATACAATGCACTCATAAATGGGTTTTGCAAGGCTAATAGAGTTATGGATGCCATGCGTCTATATGAAGAAATGCAGGTTAAAGGATTATTTCCGGATGAGGTCACTTTCAAGTTGATAGTTGGAGGGCTCATTAAGGGAAACAAACTTTCAGAGGCATGTAGGGTTTGGGATCAGATGATGGAAAAAGGCTTTACACTTGACAGACATCTCTCTGAGATTCTAATCAATGCCATTCAGTCAAGAGATGGCACATGA 1560 0.4051 MYHSVGARRLLYRSQISYYVKAGLIDTAIQVFDEMSQSNSRPFSIDYNRFIGVLLRNSHLDLAHNYYHRHVIPNGFSLTPFTYSRFISALCSVKNFSLIESLLRDMDALGYVPDIWAFNIYLNILCRENRLETALEFFRIMPLKGREPDVVSYTIIVDALCKAKRFDEVSRVWRSLIESGLKPDLKACGAVVVGLCSAGKVDLSYELVIDVIKGGVKVNCLVYNALISGFCKIGEIKKALEIKRFMSKNGCMPDLVTYNILLNYYSCDEVMLDKAVKLVETMERSGLEPDLYSYNQLLKGFCKANQVDRAYLTMVKKMQSKGVCDVVSYNTIISAFCKARKTERAYKLFEEMHRKGIQPDVITFTVLIEAFFREGSSGSDVAKKLLDQMTATGIVPDVIFYTTIFDHLCKSGNIDMAVGVFCDMVENGVSPDVVSYNALINGFCKANRVMDAMRLYEEMQVKGLFPDEVTFKLIVGGLIKGNKLSEACRVWDQMMEKGFTLDRHLSEILINAIQSRDGT 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
Tsu02g00882 519 Pfam PPR repeat 16 38 IPR002885 -
Tsu02g00882 519 Pfam PPR repeat 81 110 IPR002885 -
Tsu02g00882 519 Gene3D Tetratricopeptide repeat domain 7 70 IPR011990 GO:0005515
Tsu02g00882 519 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 518 - -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 219 253 IPR002885 -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 290 321 IPR002885 -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Tsu02g00882 519 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 518 - -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 113 IPR002885 -
Tsu02g00882 519 Pfam PPR repeat 215 246 IPR002885 -
Tsu02g00882 519 Pfam PPR repeat 393 425 IPR002885 -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 256 290 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 401 433 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 434 468 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 81 115 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 222 254 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 362 398 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 469 502 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 117 150 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 292 324 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 16 42 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 151 184 IPR002885 -
Tsu02g00882 519 TIGRFAM PPR: pentatricopeptide repeat domain 327 361 IPR002885 -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 289 IPR002885 -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Tsu02g00882 519 Gene3D Tetratricopeptide repeat domain 211 268 IPR011990 GO:0005515
Tsu02g00882 519 Gene3D Tetratricopeptide repeat domain 71 210 IPR011990 GO:0005515
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 396 IPR002885 -
Tsu02g00882 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 114 148 IPR002885 -
Tsu02g00882 519 Pfam PPR repeat family 431 479 IPR002885 -
Tsu02g00882 519 Pfam PPR repeat family 325 372 IPR002885 -
Tsu02g00882 519 Pfam PPR repeat family 253 303 IPR002885 -
Tsu02g00882 519 Pfam PPR repeat family 113 162 IPR002885 -
Tsu02g00882 519 Gene3D Tetratricopeptide repeat domain 269 377 IPR011990 GO:0005515
Tsu02g00882 519 Gene3D Tetratricopeptide repeat domain 378 518 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00882 102 512 Glycosyltransferase AT1G05670 31.084 1.71e-65 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00882 - - aprc:113872581 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00882 02 7413063 7415117 Tsu02g00882 02 7413063 7415117 ECH