Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00878 ATGTATGGTAGAACAGCCGTACCAGAAATTATGGAGAGTTCCACACTATGCCTAATCTCTTTCTTGCTTCTTGTTGGTTCCTGCTTTCAGAGTGTATCGTCGCAAAATGCATCTCAGAGTGACCAACAACAAGCTACCTTGCCACCAAGAGGTTGGAATTCCTATGATTCATTTTCCTGGATAATTTCTGAAGAAGAATTCTTACAGAATGCTGAACAAGTCGCTCAGCGTCTCCATGTTCATGGATACGAGTATGTTGTGGTGGATTGGCTTTGGTATAGGAAGAAAGTCCCCGGCGCTAATAGTAATTCTCTTGGATTCGACTTGATTGATGAATGGGGAAGGATGGTCCCTGATCCAGCAAGGTGGCCTTCTTCCAGTGGTGGGAAGGGATTCACTGAAGTTGCTAACAAAGTACATAGTTTAGGTTTAAAGTTTGGAATTCATGTTATGAGAGGAATAAGCACACAGGCTGTGAATGCAAACACCCCTATCCTAGACACAGTAAAGGGTGGTGCTTATGAAGAAGGCGGTCGAGTGTGGCATGCAAAAGACATAGCAATCCCAGCAAGGACTTGTGCATGGATGACGAATGGTTTCATGAGTGTAAATACAACATTAGGAGCAGGAAAAGCTTTTCTGAGATCCCTTTATGAACAGTATGCTGCTTGGGGACTTGATCTAGTGAAACATGATTGTGTATTTGGTGCTGACTTGGATTTAAATGAGATAACTTATGTATCTGAGCTTCTCAGCCAGGTTAATCGCTCCTTTGTGTATTCTATATCTCCCGGAACCAACGTGACATCAGCCTTGGCCAAGGAGGTAAGCGGACTAGTCAACATGTATCGCATAACAGGAGATGATTGGGATTCATGGGGGGATGTCAAGCCTCACTTTAATATATCAAGGGATTTATCTGCAGCTAATATGATAGGAGCAAAAGGTTTAAAGGGAAAGTCATGGCCTGATTTGGACATGCTACCATTCGGATGGCTGACTGATCCAGgtGTCAATGATGGTCCTCACAGGGACAGTGGATTGAATCTATTAGAGAAAAGGTCACAGATGACTTTATGGGCTTTTGCTAAGTCACCCCTTATGTATGGAGGCGATGTGCGGAAGATTGATAATGCTACCTACGACATTATCACGAATCCTACTTTACTAGAGATTAATCATTTCAGCTCTAATAATATGGAGGCATGTGATCCCTTGAAGAAGCGTCATCAAGGGACACCAAAAAGATCTAATAACGGAAAGAAACAGACGCATTCAATAGGTCTAACAAGCTGCGCTGAATCAAACGCAAGTGGTTGGATTGTTGAAAATCCTAACCAAACTCTTGAAAGAATCTGTTGGAAAGGAAGTTTAGAAAACAATTCGAACCCTTTCTGCGTACAAAAGAGAGAACTTCAGCAGCACACATTAGACGGAGATAATAAGTATCAAGAGGAATATCGCGGGAAACATCAATTATTTGCCGCAAATCAAATGACACTTTGCTTGGATGGTTCTTCAAAACAAAAAGTTACTTCCCAAGAGTTTCAGAGAGGTTCATTTTCTCCTTGCAAAATGGATCCAAATCAGATTTGGGAGCTAACATCTAATGGGACCCTTGTAAATAGTTACTCAGGTCTTTGTGCAACAGTAAATAATATAGAAGAGAATGTTGATCCGAATGTTGATTCAGACGATGTTCGCTCTTGGATTGCGACAGGAAGAAATGGAGAAGTGTATATGTCTTTCTTCAATCTAAATGATCAACAGAATACAACAATATATGCAAAAACATCATTTGTGTCTAATGTTATAACCGATAAACGCATCAATTCATGTCAAGGTAAAGAAGTGTGGAGCGGAAAGGACGTTGTAACAACGCAAGGGGTAATAGCTATGGACGTGGAAGTTCATGGATGTGCACTTTTTGTTCTTAATTGCAAATAG 1947 0.4104 MYGRTAVPEIMESSTLCLISFLLLVGSCFQSVSSQNASQSDQQQATLPPRGWNSYDSFSWIISEEEFLQNAEQVAQRLHVHGYEYVVVDWLWYRKKVPGANSNSLGFDLIDEWGRMVPDPARWPSSSGGKGFTEVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTVKGGAYEEGGRVWHAKDIAIPARTCAWMTNGFMSVNTTLGAGKAFLRSLYEQYAAWGLDLVKHDCVFGADLDLNEITYVSELLSQVNRSFVYSISPGTNVTSALAKEVSGLVNMYRITGDDWDSWGDVKPHFNISRDLSAANMIGAKGLKGKSWPDLDMLPFGWLTDPGVNDGPHRDSGLNLLEKRSQMTLWAFAKSPLMYGGDVRKIDNATYDIITNPTLLEINHFSSNNMEACDPLKKRHQGTPKRSNNGKKQTHSIGLTSCAESNASGWIVENPNQTLERICWKGSLENNSNPFCVQKRELQQHTLDGDNKYQEEYRGKHQLFAANQMTLCLDGSSKQKVTSQEFQRGSFSPCKMDPNQIWELTSNGTLVNSYSGLCATVNNIEENVDPNVDSDDVRSWIATGRNGEVYMSFFNLNDQQNTTIYAKTSFVSNVITDKRINSCQGKEVWSGKDVVTTQGVIAMDVEVHGCALFVLNCK 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00878 648 CDD RICIN 472 553 IPR000772 -
Tsu02g00878 648 SUPERFAMILY Ricin B-like lectins 470 554 IPR035992 -
Tsu02g00878 648 MobiDBLite consensus disorder prediction 405 426 - -
Tsu02g00878 648 Pfam Alpha galactosidase A 218 393 IPR002241 GO:0004553|GO:0005975
Tsu02g00878 648 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Tsu02g00878 648 Pfam Alpha galactosidase C-terminal beta sandwich domain 565 645 IPR041233 -
Tsu02g00878 648 PANTHER ALPHA-GALACTOSIDASE 15 645 - -
Tsu02g00878 648 Gene3D - 453 564 - -
Tsu02g00878 648 CDD GH27 48 393 IPR002241 GO:0004553|GO:0005975
Tsu02g00878 648 ProSiteProfiles Lectin domain of ricin B chain profile. 466 573 - -
Tsu02g00878 648 PRINTS Glycosyl hydrolase family 27 signature 351 372 IPR002241 GO:0004553|GO:0005975
Tsu02g00878 648 PRINTS Glycosyl hydrolase family 27 signature 42 61 IPR002241 GO:0004553|GO:0005975
Tsu02g00878 648 PRINTS Glycosyl hydrolase family 27 signature 136 157 IPR002241 GO:0004553|GO:0005975
Tsu02g00878 648 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 15 645 IPR002241 GO:0004553|GO:0005975
Tsu02g00878 648 SUPERFAMILY (Trans)glycosidases 43 394 IPR017853 -
Tsu02g00878 648 Gene3D Aldolase class I 25 395 IPR013785 -
Tsu02g00878 648 Gene3D - 565 647 IPR013780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00878 Tsu-Chr2 7389552 7393129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00878 14 471 Glycoside Hydrolase AT3G26380 63.226 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00878 - - gmx:100802840 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00878 02 7389552 7393129 Tsu02g00878 02 7389552 7393129 ECH