Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00666 ATGAAAGGTGGAACGGTTCAGATTAATTGGCACGAAAGTAAACCCGTTTTAACCCTAGATTTCCATCCTCTCTCAGCCACACTCGCCACCGCCGGCGCCGATTACGACATCAAGTTATGGTCAATTAAACCCTCAGGAGCACAGAAGAAGCTTCCAGAAGTTACTTATGTCAATAGTCTCTCTTATCATAGTTCGGCTGTTAATGTTATTCGCTTCTCTTCTTCCGGGGAATTATTAGCTTCTGGGTCTGATGgaGGTGAATTGTTAATATGGAAGCTACATTCTACGGATACTGGCCAAACATGGAAGGTTCTCAAGATGTTACGATCTCATATCAAGGACATTATGGACCTGGAGTGGTCTACTGATGCTGCATATATCATATCCGGATCAGTTGATAATTCTTGCATTATATGGGATGTTAACAAAGGAACTAACCTTCAGACATTGGATACCCATGCACACTATGTTCAGGGGGTAGCATGGGACCCTTTAGGGAAGTATCTTGCTTCTCTTAGTTCCGACCGGACTTGCCGAATTTACATCAGTAAGCCCCAGAAATCAAAGGGTGTTGAGAAAATCAATTATGTTTGCAAGCATGTCATTTCCAAGGCAGAACAGCCATTATTAAAGAATTCTAAGTCCACAAAATATCATCTTTTCCATGATGAAACATTGCCCTCGTTCTTTAGAAGATTAGCTTGGTCTCCAGATGGTTCATTTCTACTTGTGCCTGCAGGTTCTTATAAAGTCGGTACTGCATCTGAATCTGTAAATGCAGCGTACATATTTTCCAGAAAAGATCTTTCTCGGCCTGCTATACAGCTTCCTTGTGCAAGCAAAGCTATTGTAGCTGTCCGGTtttgtcctatattttttaacCTTAAAGGAACAAACTCAGATGGGTTATTTAAGCTACCATATCGCATTGTATTTGCCGTGGCCACATTGAATTCATTGTACATTTATGACACCGAGAGCACTTCTCCAATAGCTGTATTTGCTGGTCTTCACTATGCTCCAGTAACAGATATTACCTGGTCACCTGATGCCCGTTATTTGGCATTCTCCTCGCAAGATGGTTTCTGCTCTTTGGTTGAGTTTGAAGATGGCGAACTTGGATCACCGTACTGTTTATCAAAAGGAAATGTCTCGGACATGGATAGTAAAAGTACCCTGCAGACAGCCAACGACGTTGTATTACCAACTGGGAGTGTTGGCGAAGTTGTAGCAGAAAGCAGGAAAATGGAAGCAGAAGAAAAGGTTGATGACATGGACATAGAAACATCTAGGGATATTGGTGCAGTTACGTCAGAAAGCTGCGATAAGGCTGAGGACATGATCATCAAATCAACTGGGAATGTTAGTGCAGTTATAGCAAATAGTAGGAAAAATGAAGCACGGCATAAAGCTGATGATATGGTCATTGAAGGAGGTAAAGCAGATAGTATGAAAAGTGATGCAGAAGAGAAGACTGATGACATGATCATTGAGACAAATGAGACTGCGAATATTGAAGCAGCTCTATTAGATGATAGAAAAACTGAAGATGCTACAGCAAAACAGGTTAGTAGTTCAGGTAGTGTTAATTTTGGAGCTGAAGAGAAGGAATTGAAACAACCAGTTAATCCAGACAATAAACAAAGTGAAGCAGAAAAGAAGGCAGATAAACCGCAATCAACTTTAGATGGCATAAAACCAAGGCCAGAAGAAAAAATAGGGAATCAATTGTCTAGTTCAAAGAGCACACCCGTAACAAATAAGCCAGCCAGGAAGCGCATTACTCCTGTAGCAATTGATCCATGA 1806 0.4086 MKGGTVQINWHESKPVLTLDFHPLSATLATAGADYDIKLWSIKPSGAQKKLPEVTYVNSLSYHSSAVNVIRFSSSGELLASGSDGGELLIWKLHSTDTGQTWKVLKMLRSHIKDIMDLEWSTDAAYIISGSVDNSCIIWDVNKGTNLQTLDTHAHYVQGVAWDPLGKYLASLSSDRTCRIYISKPQKSKGVEKINYVCKHVISKAEQPLLKNSKSTKYHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKVGTASESVNAAYIFSRKDLSRPAIQLPCASKAIVAVRFCPIFFNLKGTNSDGLFKLPYRIVFAVATLNSLYIYDTESTSPIAVFAGLHYAPVTDITWSPDARYLAFSSQDGFCSLVEFEDGELGSPYCLSKGNVSDMDSKSTLQTANDVVLPTGSVGEVVAESRKMEAEEKVDDMDIETSRDIGAVTSESCDKAEDMIIKSTGNVSAVIANSRKNEARHKADDMVIEGGKADSMKSDAEEKTDDMIIETNETANIEAALLDDRKTEDATAKQVSSSGSVNFGAEEKELKQPVNPDNKQSEAEKKADKPQSTLDGIKPRPEEKIGNQLSSSKSTPVTNKPARKRITPVAIDP 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00666 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Tsu02g00666 601 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Tsu02g00666 601 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Tsu02g00666 601 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Tsu02g00666 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
Tsu02g00666 601 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 600 IPR045145 GO:0006335
Tsu02g00666 601 SMART WD40_4 2 41 IPR001680 GO:0005515
Tsu02g00666 601 SMART WD40_4 327 367 IPR001680 GO:0005515
Tsu02g00666 601 SMART WD40_4 143 182 IPR001680 GO:0005515
Tsu02g00666 601 SMART WD40_4 101 140 IPR001680 GO:0005515
Tsu02g00666 601 SMART WD40_4 53 92 IPR001680 GO:0005515
Tsu02g00666 601 SUPERFAMILY WD40 repeat-like 13 397 IPR036322 GO:0005515
Tsu02g00666 601 MobiDBLite consensus disorder prediction 509 601 - -
Tsu02g00666 601 Gene3D - 2 186 IPR015943 GO:0005515
Tsu02g00666 601 Gene3D - 187 398 IPR015943 GO:0005515
Tsu02g00666 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Tsu02g00666 601 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 95 - -
Tsu02g00666 601 MobiDBLite consensus disorder prediction 573 589 - -
Tsu02g00666 601 MobiDBLite consensus disorder prediction 538 570 - -
Tsu02g00666 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Tsu02g00666 601 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Tsu02g00666 601 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Tsu02g00666 601 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Tsu02g00666 601 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Tsu02g00666 601 Pfam WD domain, G-beta repeat 59 92 IPR001680 GO:0005515
Tsu02g00666 601 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Tsu02g00666 601 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00666 Tsu-Chr2 5645225 5650062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00666 25 181 Miscellaneous Gene Families AT5G08390 26.582 6.49e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00666 K10751 - gmx:547606 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00666 02 5645225 5650062 Tsu02g00666 02 5645225 5650062 ECH