Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00570 ATGGAAGAACTAGATCCAGATGACACTGGATATATATTGATAGGCAACCTAGAGACTCTCTTATTGCATGGACCAGAAGAACCTACAAGGGGAGAAAGTAAGTACCTGAGCCAAATGTTGAGCCAAAAGCTTAGGCCTACATTTGAGGAAAATCCTATTAAGAGGTGGTATAGAGATACCAAGTACTTCTTCCAGGATAACTGGCGAAGATCTTGGGTATTTGCACTATGGATTGGTGTTATGTTAGGCCTATTTGCCTATAAATTTGTGCAGTATAGGAGAAGAGCTGCATACGAAGTGATGGGGCATTGTGTGTGCATGGCAAAAGGTGCTGCTGAAACACTTAAATTGAACATGGCTATTATCTTATTGCCTGTTTGCCGGAACACCATCACTTGGCTCAGGAATAGGACCAAGTTAGGAGCTTTTGTTCCTTTTGATGATGGCCTCAACTTTCACAAGATGATAGCTGTGGCAATATCAATTGGTGTTGGTATACATGCTATTTATCATCTTGCTTGTGATTTTCCCCGCCTTCTTCACGCAAGCAGTGAAAAATACAAGCTGATGAAGCCTTTTTTTGGAGATCAACCATCGAGTTACTGGCATTTTGTCAAATCATGGGAAGGAGTAACAGGGATTCTAATGGTTGTGTTAATGACAATAGCCTTTACACTGGCCAATCCTAGGTTCAGGAGGAACCGCACCAAACTACCTAAACCTTTCAGCAAACTCACAGGTTTCAATGCCTTTTGGTATTCTCATCACCTCTTCGTCGTTGTCTATGCCCTGTTGATTATCCATGGAACCAAACTTTACTTGAGTAAGGAATGGTATAAGAAAACGACATGGATGTATCTGGCTATTCCCATCACCATTTATGCATTGGAAAGACTTATCAGAGCTCTTAGATCGAGCATCAAGTCTGTGAAAATATTGAAGGTGGCTGTTTATCCTGGAAATGTGTTGGCAATTAATATGTCAAAGCCTCAAGGGTTTAGCTATAAGAGTGGACAATACATGCTTGTCAATTGTGCTGCTGTGTCTCCACTTGAATGGCATCCATTTTCTATAACTTCCGCCCCTAATGATGATTACCTTAGTGTTCATATTAAAATACTTGGTGATTGGACTCGGGGTCTGAAAACTAAATTCTCAcagGCGTGCCAGCCAGCCGTCAATGGACAGAGTGGACTTTTAAGAGCAGAATGCTTGAAAGGAGATAACAGTCCAAGTACTTTTCCTAAAGTTCTGATTGATGGTCCGTATGGAGCGCCAGCACAAGACTACAGGGAGTATGAGGTGGTTTTACTTGTGGGGCTGGGAATAGGGGCTACCCCAATGATAAGTATACTAAAGGACATGGTCAATAATTTCAAGGCCATGGAAGAGGAAGATGGGTTTGCAATAGAGGAAGGATCACCGGTGACAACCAACCATAAAGACACTAGGTTCAGTGACTTCAAGACAAGGAGGGCATACTTCTATTGGGTGACAAGAGAACAAGGTTCCTTTGATTGGTTTAAAGGGGTTATGAATGAAGTAGCTGAGGAGGACAGAAGGGGATTGATTGAGCTACACAGCTACTGCACCAGCGTCTATGAACAGGGTGATGCTCGCTCTGCTCTTATTGCTATGGTACAGTCTATTAACCATGCAAAGAATGGTGTGGACATTGTCTCTGGCACTCGTGTCAAGTCTCACTTTGCCAAACCCAATTGGCGAACTGTCTACAAACGAATCGCTCTTAATCATCCGGCAGCACGAGTTGGGGTATTTTACTGTGGGCCATCTACCCTGACCCACGAGCTACGTCAGTTATCATTGGATTTCTCACATAATACATCCACCAAATACGACTTTCATAAAGAAAATTTCtga 1881 0.4248 MEELDPDDTGYILIGNLETLLLHGPEEPTRGESKYLSQMLSQKLRPTFEENPIKRWYRDTKYFFQDNWRRSWVFALWIGVMLGLFAYKFVQYRRRAAYEVMGHCVCMAKGAAETLKLNMAIILLPVCRNTITWLRNRTKLGAFVPFDDGLNFHKMIAVAISIGVGIHAIYHLACDFPRLLHASSEKYKLMKPFFGDQPSSYWHFVKSWEGVTGILMVVLMTIAFTLANPRFRRNRTKLPKPFSKLTGFNAFWYSHHLFVVVYALLIIHGTKLYLSKEWYKKTTWMYLAIPITIYALERLIRALRSSIKSVKILKVAVYPGNVLAINMSKPQGFSYKSGQYMLVNCAAVSPLEWHPFSITSAPNDDYLSVHIKILGDWTRGLKTKFSQACQPAVNGQSGLLRAECLKGDNSPSTFPKVLIDGPYGAPAQDYREYEVVLLVGLGIGATPMISILKDMVNNFKAMEEEDGFAIEEGSPVTTNHKDTRFSDFKTRRAYFYWVTREQGSFDWFKGVMNEVAEEDRRGLIELHSYCTSVYEQGDARSALIAMVQSINHAKNGVDIVSGTRVKSHFAKPNWRTVYKRIALNHPAARVGVFYCGPSTLTHELRQLSLDFSHNTSTKYDFHKENF 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00570 626 Gene3D Translation factors 295 400 - -
Tsu02g00570 626 PRINTS Cytochrome B-245 heavy chain signature 415 428 IPR000778 GO:0016020|GO:0016491
Tsu02g00570 626 PRINTS Cytochrome B-245 heavy chain signature 248 268 IPR000778 GO:0016020|GO:0016491
Tsu02g00570 626 PRINTS Cytochrome B-245 heavy chain signature 438 455 IPR000778 GO:0016020|GO:0016491
Tsu02g00570 626 PRINTS Cytochrome B-245 heavy chain signature 156 174 IPR000778 GO:0016020|GO:0016491
Tsu02g00570 626 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 305 429 IPR017927 GO:0016491
Tsu02g00570 626 Pfam Ferric reductase like transmembrane component 110 266 IPR013130 -
Tsu02g00570 626 Pfam FAD-binding domain 308 426 IPR013112 GO:0016491
Tsu02g00570 626 PANTHER NADPH OXIDASE 1 626 - -
Tsu02g00570 626 PANTHER RESPIRATORY BURST OXIDASE-LIKE PROTEIN D 1 626 - -
Tsu02g00570 626 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 431 626 IPR039261 -
Tsu02g00570 626 Pfam Ferric reductase NAD binding domain 433 608 IPR013121 GO:0016491
Tsu02g00570 626 SUPERFAMILY Riboflavin synthase domain-like 309 425 IPR017938 -
Tsu02g00570 626 Gene3D - 424 626 IPR039261 -
Tsu02g00570 626 SFLD NADPH oxidase subgroup (NOX) 1 626 - -
Tsu02g00570 626 CDD NOX_Duox_like_FAD_NADP 312 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00570 Tsu-Chr2 4811007 4817834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00570 1 626 Miscellaneous Gene Families AT5G51060 68.304 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00570 K13447 - gmx:100814238 1112.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00570 02 4811007 4817834 Tsu02g00570 02 4811007 4817834 ECH