Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00566 ATGGGAGAACGAAAGCGAATCTTTgcattcatcttcttcatcatttctATCTCATCGTTACATCTTCTCCATGCTTCCGATGATGTTTATGACGCTACATTTTACGAATCATTTGATGACGATTTTGAGGGCCGTTGGATTGTTTCTGAGAAGGATGAGTACAACGGTGTCTGGAAGCATGCAGAGAGTGAGGGGCATGAAGATTACGGGCTTCTTGTCAGTGAGAAAGCAAGGAAATATGCTATAGTTAAAGAACTTGATGAGCCTGTGATTCTTAAGGATGAATCAGTTGTTCTCCAGTTTGAGACTCGCCTACAGAATGGCCTCGAATGTGGTGGTGCATATCTAAAGTATCTTCGACCACAGGAGGCCGGTTGGAAACCAAAGGAATTTGACAATGATTCTCCATATTCTATAATGTTTGGTCCTGACAAGTGTGGGGCCACAAACAAGGTGCACTTCATTTTCAAGCATAAGAATCCTAAGAGTGGGGAATATGTTGAACACCATCTCAAGTTTCCTCCATCTGTTCCTTCTGACAAGCTATCTCACGTGTACACTGCTATTTTAAAACCCGACAATGAGTTGCAAATTTTGATTGATGGGGAACAGAAGAAAAAGGCAAATTTTTTATCTTCTGAGGATTTTGAGCCTTCTCTTATCCCTCCCAAGACAATCTCAGATCCTGATGATTACATGCCAAAGGACTGGGacgagagagagaaaattcCAGACCCAAATGCAGTAAAGCCAGATAACTGGGATGAGAATGCACCCTTGGAAATTGTTGATGAAGAAGCTGAGAAACCTGAAGGATGGTTGGATGATGAGCCTGAGGAGATAGATGACCCAGAGGCTACAAAACCAGAAGATTGGGACGATGAGGAGGATGGTGAATGGGAAGCCCCAAAGATTACTAACCCAAATTGTGAAACAGCCCCTGGTTGTGGTGAATGGAAAAGGCCAATGAAGAAGAATCCAGCATATAAGGGAAAATGGCATGCCCCCCTTATTGAAAACCCAGCTTATAAGGGTATATGGAAGCCTCGGGACATTCCAAACCCCGGTTACTTTGAACTTAAAAGACCTGATTTTGAACCTATCGCTGCTATTGGTATTGAGATTTGGACAATGCAGGATGGCATATTGTTTGACAATATTTTGATAGCTAAAGATGATAAGATTGCCGCATCATACAGGGAGACTACATGGAAGCCCAAGTTTACTATTGAGAAAGAGAAACAGAGGGCAGAATCGGATACTGGATCAAGTGGTCTTGCAATCATCCAAAAGAAGGTGTTTGACCTGTTATACAAGATCGCAGACATTCCTTTCCTGAGTGCCTACAAGCTTAAAATACAtGATCTCATTGAAAAGGGTGAATCGCAGCCAAATCTCACTGTCGGAATTCTTGTAGCCGTTGTGGTTATTATCTTGACACTTTTCCTCAGTATTGTATTCGGTGGGAAGAAAAAGCCCGCAAGAGTGGAGAAGAAGACAAAAACACCAGCTGCAGAAACTTCCACTAACCAAGGAAGTGCAGAGaatgaagaaaacaaagagGAGGAAACATCCAAGGGTCCACGTCGGAGGGTAAAGCGAGATAATTGA 1611 0.4134 MGERKRIFAFIFFIISISSLHLLHASDDVYDATFYESFDDDFEGRWIVSEKDEYNGVWKHAESEGHEDYGLLVSEKARKYAIVKELDEPVILKDESVVLQFETRLQNGLECGGAYLKYLRPQEAGWKPKEFDNDSPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKFPPSVPSDKLSHVYTAILKPDNELQILIDGEQKKKANFLSSEDFEPSLIPPKTISDPDDYMPKDWDEREKIPDPNAVKPDNWDENAPLEIVDEEAEKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPKITNPNCETAPGCGEWKRPMKKNPAYKGKWHAPLIENPAYKGIWKPRDIPNPGYFELKRPDFEPIAAIGIEIWTMQDGILFDNILIAKDDKIAASYRETTWKPKFTIEKEKQRAESDTGSSGLAIIQKKVFDLLYKIADIPFLSAYKLKIHDLIEKGESQPNLTVGILVAVVVIILTLFLSIVFGGKKKPARVEKKTKTPAAETSTNQGSAENEENKEEETSKGPRRRVKRDN 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00566 536 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Tsu02g00566 536 PANTHER - 5 192 - -
Tsu02g00566 536 PANTHER - 193 536 - -
Tsu02g00566 536 ProSitePatterns Calreticulin family signature 2. 139 147 IPR018124 GO:0005509
Tsu02g00566 536 MobiDBLite consensus disorder prediction 493 536 - -
Tsu02g00566 536 SUPERFAMILY P-domain of calnexin/calreticulin 220 359 IPR009033 GO:0005509|GO:0005515
Tsu02g00566 536 MobiDBLite consensus disorder prediction 229 249 - -
Tsu02g00566 536 Gene3D - 34 399 - -
Tsu02g00566 536 ProSitePatterns Calreticulin family repeated motif signature. 281 293 IPR018124 GO:0005509
Tsu02g00566 536 PANTHER CALRETICULIN AND CALNEXIN 5 192 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g00566 536 PANTHER CALRETICULIN AND CALNEXIN 193 536 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g00566 536 MobiDBLite consensus disorder prediction 258 300 - -
Tsu02g00566 536 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g00566 536 PRINTS Calreticulin signature 135 151 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g00566 536 PRINTS Calreticulin signature 233 246 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g00566 536 PRINTS Calreticulin signature 281 303 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g00566 536 PRINTS Calreticulin signature 338 357 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g00566 536 PRINTS Calreticulin signature 370 390 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g00566 536 Pfam Calreticulin family 34 389 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Tsu02g00566 536 MobiDBLite consensus disorder prediction 515 536 - -
Tsu02g00566 536 MobiDBLite consensus disorder prediction 219 318 - -
Tsu02g00566 536 Gene3D Calreticulin/calnexin, P domain 219 363 IPR009033 GO:0005509|GO:0005515
Tsu02g00566 536 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 259 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00566 Tsu-Chr2 4764965 4769456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00566 4 536 Miscellaneous Gene Families AT5G61790 72.336 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00566 K08054 - gmx:100810595 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00566 02 4764965 4769456 Tsu02g00566 02 4764965 4769456 ECH