Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00555 ATGGGAAATTGCTGCTCCGATTACGCCGGTGCTCGCACCGCCATCGGTGGAACTGCCGGCAGTCTACTCAATCAAACAAACGACGCCGTTgataacttcttcaagtctcGTGGCTACCAAGGTCTCTTCTCTCAGATCGAGTTGTCGTTTTCTGCTTCTGGTTTGCGTGATCGAGATGTGCTCTCTAAGAGTGATCCAATAATGGTTCTTTATGCAAAAGGGAAAAATGGAGCACTTGAGGAAATTGGCCGGACAGAAGTAGTTTTGAATTCGTTGAATCCAACATGGATTACTAAACAAACTCTCACTTATCATTTCGAGGTTGTTCAGGTTTTAGTGTTTCGTGTTTATGACGTTGATACTCAATTTCACAACGCAGACGTGAAGATACTTAAGCTAGAAGAACAACAATTTCTAGGTGAGGCAACATGTGCATTATCTGAGATAATTACAAAGTCGGATGGATCATTGACATTAGATTTACTCAGACAAGATTCTATCAGATCGGGCGACTCCCAAAAATGTGGGAAGCTCAAAGTGCATGCTGAGGAATGTGTTGGCTCAAAGACAACAGTAGAGTTGATACTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAAGAGTGATCCCTTTTTATTAGTATCAAAAGTTGTGGAAAGTGGTGCCCATATTCCAATTTGCAAAACAGAAGCTATAAAGAATGATCACAGCCCAACGTGGAAGCCAGTGTTTTTGAATGTACAACAAGTAGGAAGCAAGGAAAGTCCCTTGATAATAGAGTGCTACAACTTTAATACCAATGGCAAACATGATTTGTTGGGAAAAGTGCAGACATCTTTGGTGGAGTTGGAGAAGCTCTATTCTGGTGGCCAaggagaaaatttatttttgtctgCTTCCGTGGGTCATGATTCTCAGACCAAgGTATTAAAGAGCCGGCTATTTGTGGACAAATTTTCTGAAAATATCCAATATACTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGCAACTCACGCCTTCCGGATTCTTTGCATTACATTGATCCTTCAGGACGGCCAAATGCATACCAAAGAGCAATTGTTGAGGTTGGGGAGGTGTTACAGTTTTATGATTCAGACAAACGATTTCCTACATGGGGATTTGGAGCACGACCAATCGATGGTCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGTAATTACTGTGAGGTGGAAGGCATTCAGGGAATTATGATGGCTTACGCAAGTGCTTTGCTCAATGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATAAATAATGCTGCACTTATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTCCTGTTGATAATCACAGATGGAGTTGTGACGGATCTCCAAGAAACAAAAGATGCGCTTGTTAAGGCATCAGACCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCCGATTTCAAAGAAATGGAGATCTTGGATGCAGACAAGGGAGATAGGCTTGAAAGTTCATCTGGACGTGTTGCTTCACGTGATATAGTTCAGTTTGTTCCATTTCGGGATGTTCAAAGTGGGGAAATTTCAGTAGTGCAAGCACTTCTAGCAGAATTACCTACTCAATTTTTAGCTTACATGCGGAGCAGAAATATCCTGCCAAATCCCTAG 1731 0.4113 MGNCCSDYAGARTAIGGTAGSLLNQTNDAVDNFFKSRGYQGLFSQIELSFSASGLRDRDVLSKSDPIMVLYAKGKNGALEEIGRTEVVLNSLNPTWITKQTLTYHFEVVQVLVFRVYDVDTQFHNADVKILKLEEQQFLGEATCALSEIITKSDGSLTLDLLRQDSIRSGDSQKCGKLKVHAEECVGSKTTVELILRCSDLEYRDLFSKSDPFLLVSKVVESGAHIPICKTEAIKNDHSPTWKPVFLNVQQVGSKESPLIIECYNFNTNGKHDLLGKVQTSLVELEKLYSGGQGENLFLSASVGHDSQTKVLKSRLFVDKFSENIQYTFLDYLAGGFELNFMVAIDFTASNGNSRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSNYCEVEGIQGIMMAYASALLNVSLAGPTLFGPVINNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEILDADKGDRLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLAYMRSRNILPNP 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00555 576 Pfam Copine 359 574 IPR010734 -
Tsu02g00555 576 SMART VWA_4 338 535 IPR002035 -
Tsu02g00555 576 Gene3D C2 domain 195 316 IPR035892 -
Tsu02g00555 576 CDD C2B_Copine 192 287 IPR037768 -
Tsu02g00555 576 CDD C2A_Copine 44 161 - -
Tsu02g00555 576 ProSiteProfiles C2 domain profile. 25 159 IPR000008 -
Tsu02g00555 576 Pfam C2 domain 195 289 IPR000008 -
Tsu02g00555 576 Pfam C2 domain 51 155 IPR000008 -
Tsu02g00555 576 ProSiteProfiles VWFA domain profile. 340 559 IPR002035 -
Tsu02g00555 576 SMART C2_3c 22 158 IPR000008 -
Tsu02g00555 576 SMART C2_3c 195 297 IPR000008 -
Tsu02g00555 576 ProSiteProfiles C2 domain profile. 174 298 IPR000008 -
Tsu02g00555 576 PANTHER COPINE 1 574 IPR045052 GO:0005544
Tsu02g00555 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 50 161 IPR035892 -
Tsu02g00555 576 Gene3D C2 domain 49 194 IPR035892 -
Tsu02g00555 576 CDD vWA_copine_like 310 563 IPR010734 -
Tsu02g00555 576 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 1 574 - -
Tsu02g00555 576 SUPERFAMILY vWA-like 339 521 IPR036465 -
Tsu02g00555 576 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 195 285 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00555 Tsu-Chr2 4697368 4705569 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00555 - - gmx:100807801 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00555 02 4697368 4705569 Tsu02g00555 02 4697368 4705569 ECH