Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00553 ATGGTACTATCTCATCATCaccaagaacaagaacaagaactGCATCCATTAACAAGAACAAGAGAGGAACATCATCAAGAACAACAAAACAGCAATGTTACTAGTAGTTTCGACGAACAAGAGGAAGCATTGCTTGCTCTCGTCGAACACCGCCATTATCAAGTCAGGAAGCTCCTTTTGCAGCTTAGGGAAGCAGAAGAGAAGTTACGAAGTTCTGAATCCAAATTGGCTTTGTTTCAAGGTAAGACCAATGGAAAGACAAAACATGGATCAAACAGTTTCAATCATAAAAATGAAACTCCTTCCAAAATCCATCATCAACCAAAGCCTCAAAGCGCACGGTTACCAGATTCTGCAAAAGCttcaataaattataattattatgaagCTAACCGATCAACTTTTAGTACTCAGAGACTTCCTACTGAGAAGGATGATTTCAGAGGAACTAAAAGGAAGTTTGAAATTAAGGGGCAAAAGGATTTGGTTCCTTTCATAGGTAAAAGGTCTTTTGCACAATCAGTGAACTATGGAACAAGAAGCTACATATCAAGTCTACACAACAAGAGATTGAGAAATCTTGCTCTCTGTCCTGTAAATGATCAGCATTTTGTGACTAGTGCTTTGGATGGAGTGGTTCGCTTGTGGGAAGTTCACTCTCGAGGACCAACAGTTAATCTGCTTAGCACTACTGCTTGTGCAACTGTAGAGCAGAAGAGGTGGCCCGAAGATATAGCTTGGCATCCAGATGGAAAGAGCCTTTTTTCAGTATATAGTGCTGATAGTCAAGACTCTCAAGTATCGGTTACAAAATTCAAAGAAGGTGAAAGGAGTGCACAAGTCAGTTTCTTGGAAGACAAGCCTCATGTTAAGGGTGCTATCAATAGCATTGTTTTTCTGCCATGGGAAAAAACCTGTTTTGCAACAGCAGCAACTCATAGTGTTATGGTATGGAGTGAAAATGCTGAGAAAAAATGGAAGCCAAAAGCATTGCATAGTAATTTTCATACTTCTGCGGTCATGGGAGTTGCTGGTGTTCAGCACAAGAAAATTGTGTTGTCTGTTGGTAAAGACAGAAGAATTTTGGGGTACAATGCTGAAGAAGGAAAACAAGATTTCATGCTTCAGGTTGATAGTAAATGCTTGAGTATCTTGCCAAATCCATGCGACTTCAATTTGTTCATGGTTCAAACCGGGACTCATGATAAGCAACTTCGACTATTTGATATTAGATTGAAGCAGAAAGAGGTTCATGCATTTGGATGGAAGCAAGAAAGCAGTGATACACAATCAGCTCTGGTAAATCAAGATTGGTCTCAAAATGGACTTTACATAACATCTGGTTCAGCTGATCCATTAATTCACATATTTGATATTAGATATAATGGTCACAAGCCTTCTCAATCTATTGAAGCTCATAAAAAACGAGTTTTCAAAGCCATGTGGCATCAGTCTCTTCCACTTCTCATTTCCATATCATCTGATCTCAACATTGGATTACACAAGTTTGTGTAG 1515 0.3822 MVLSHHHQEQEQELHPLTRTREEHHQEQQNSNVTSSFDEQEEALLALVEHRHYQVRKLLLQLREAEEKLRSSESKLALFQGKTNGKTKHGSNSFNHKNETPSKIHHQPKPQSARLPDSAKASINYNYYEANRSTFSTQRLPTEKDDFRGTKRKFEIKGQKDLVPFIGKRSFAQSVNYGTRSYISSLHNKRLRNLALCPVNDQHFVTSALDGVVRLWEVHSRGPTVNLLSTTACATVEQKRWPEDIAWHPDGKSLFSVYSADSQDSQVSVTKFKEGERSAQVSFLEDKPHVKGAINSIVFLPWEKTCFATAATHSVMVWSENAEKKWKPKALHSNFHTSAVMGVAGVQHKKIVLSVGKDRRILGYNAEEGKQDFMLQVDSKCLSILPNPCDFNLFMVQTGTHDKQLRLFDIRLKQKEVHAFGWKQESSDTQSALVNQDWSQNGLYITSGSADPLIHIFDIRYNGHKPSQSIEAHKKRVFKAMWHQSLPLLISISSDLNIGLHKFV 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00553 504 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 110 - -
Tsu02g00553 504 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 138 503 - -
Tsu02g00553 504 SUPERFAMILY WD40 repeat-like 190 500 IPR036322 GO:0005515
Tsu02g00553 504 MobiDBLite consensus disorder prediction 78 116 - -
Tsu02g00553 504 Gene3D - 385 503 IPR015943 GO:0005515
Tsu02g00553 504 Gene3D - 174 384 IPR015943 GO:0005515
Tsu02g00553 504 SMART WD40_4 463 502 IPR001680 GO:0005515
Tsu02g00553 504 SMART WD40_4 229 271 IPR001680 GO:0005515
Tsu02g00553 504 SMART WD40_4 179 217 IPR001680 GO:0005515
Tsu02g00553 504 SMART WD40_4 421 458 IPR001680 GO:0005515
Tsu02g00553 504 SMART WD40_4 277 319 IPR001680 GO:0005515
Tsu02g00553 504 SMART WD40_4 327 365 IPR001680 GO:0005515
Tsu02g00553 504 MobiDBLite consensus disorder prediction 1 37 - -
Tsu02g00553 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 226 IPR001680 GO:0005515
Tsu02g00553 504 MobiDBLite consensus disorder prediction 1 28 - -
Tsu02g00553 504 MobiDBLite consensus disorder prediction 78 98 - -
Tsu02g00553 504 Coils Coil 55 82 - -
Tsu02g00553 504 Pfam WD domain, G-beta repeat 435 458 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00553 Tsu-Chr2 4681197 4684865 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00553 - - gmx:100799587 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00553 02 4681197 4684865 Tsu02g00553 02 4681197 4684865 ECH