Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00543 ATGTCTAGGGTTTTGGCGCAGTCGATTAATATCCCTGGTCTAGTGGCTGGTCGAAGGCATGGCAATAACACCAATGGATCGGTTAGATCGAGAAGGTCTGTTAGAATGGCGTATGCCACACGGATTGTTGCACCGAGATTGACTGCTTTTTCTGGTTTGAACTCGTTGGATTCTATGTTGAGACCTGGACAGGCTTTTCATTCTAAGGTGCTTACTCAAATTGGTGGTACTAATAGACCAAAGGGTGGTAGAGGTAGTAGATGTGTAACAAGAGCCATGTTTGAGCGTTTCACGGAGAAAGCAATCAAAGTTATTATGTTGGCTCAGGAGGAAGCAAGGCGTCTAGGACATAATTTTGTCGGAACAGAACAGATTCTGTTGGGTCTTATTGGTGAAGGCACTGGCATTGCTGCTAAGGTTTTAAAGTCAATGGGAATTAACCTAAAAGATGCACGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGTTTTGTCGCTGTTGAGATTCCGTTTACTCCTCGTGCCAAGCGGGTTTTGGAACTCTCATTGGAGGAAGCTCGCCAACTTGGTCACAATTATATCGGATCTGAGCACTTGCTTTTGGGTCTTCTCCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAATTTGGGTGCTGATCCAACTAATATTCGAACCCAGGTCATTCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGGGCAACTGTTGGCTCTGGAAGTAGTAACAATAAGATGCCAACTTTGGAGGAGTTTGGCACCAATTTGACCAAGCTAGCAGAGGAGGGTAAATTGGATCCTGTTGTGGGTAGGCAGCCACAAATTGAACGTGTGACTCAAATCTTGGGTCGTCGTACAAAAAATAATCCTTGTCTTATTGGTGAACCCGGTGTGGGAAAGACAGCTATTGCTGAAGGTCTCGCTCAAAGGATTGCAAATGGTGATGTCCCTGAAACCATAGAGGGAAAGAagGTTATAACCCTAGATATGGGTCTACTTGTCGCTGGAACTAAATACCGTGGAGAATTTGAGGAGAGATTGAAAAAACTAATGGAGGAAATCAAGCAAAGTGATGAAATAATACTTTTCATTGATGAAGTGCACACTCTAATTGGAGCTGGAGCAGCTGAAGGGGCAATTGATGCAGCAAACATATTGAAACCAGCTCTTGCTAGAGGTGAACTACAgTGTATAGGAGCCACAACACTAGATGAATATAGGAAGCACATTGAAAAAGATCCAGCATTGGAAAGGCGATTCCAACCAGTTAAAGTGCCAGAACCAACTGTGAGTGAAACCATACAAATTCTCAAAGGGCTTAGAGAGCGCTATGAGATTCACCACAAGCTCCGTTATACTGATGATGCTCTTGTAGCTGCTGCAGAGCTGTCACATCAATACATCAGTGATCGATTTTTGCCTGACAAAGCTATAGATTTGATTGACGAAGCTGGTTCCCGAGTCCGACTTCAACATGCACAGTTACCCGAAGAAGCAAGAGGTCTCGAAAAGGAGGTTAGGCAGATAATCAAGGAGAAAGATGAAGCTGTTCGCAACCAAGAATTTGAAAAGGCTGGAGAGCTACGGGATAAAGAAATGGATCTTAAGACTCAGATATCAGCACTTATTGAAAAAAACAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGTAGGTGCACTTGTGACTGAAGTTGACATACAACATATTGTCGCCGCCTGGACTGGTATCCCTGTTGACAAAGTCTCGGTTGATGAATCTGACCGCCTTCTCAAGATGGAAGAGACCTTACACAAACGCATTATTGGTCAGCATGAAGCAGTAGAAGCCATTAGCCGGGCTATCCGCCGTGCACGTGTTGGACTTAAGAACCCTAACCGGCCAATAGCCAGCTTCATCTTTTCTGGTCCTACTGGTGTGGGGAAGTCTGAGTTGGCCAAAACATTGGCCTCATACTACTTTGGATCTGAAGAGGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACAGTCTCCAAACTCATTGGTTCACCTCCTGGATATGTTGGTTACACCGAGGGTGGTCAACTGACTGAGGCAGTTCGTCGTCGTCCCTACACTGTTGTACTCTTTGATGAGATTGAGAAAGCTCATCCTGATGTCTTCAACATGATGCTTCAAATCTTGGAAGATGGGAGGCTAACAGATAGTAAGGGAAGAACTGTGGATTTCAAGAACACACTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGTCGTATAGGATTTGACCTTGACTATGACGAGAAGGACAGCAGTTATAACAGAATCAAGAGCTTGGTGACTGAGGAGCTGAAGCAATACTTCAGGCCAGAGTTCTTGAATAGGCTGGATGAAATGATTGTTTTCAGGCAACTCACAAAACTGGAAGTTAAGGAGATAGCTGATATAATGCTGAAGGAGGTGTTTGAGAGACTAAAAGTCAAAGAGATTGAGCTTTCAGTGACAGAGAGATTCAGGGAGAGAGTTGTCGATGAAGGTTATAATCCTAGTTATGGAGCCAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGATGCTTTCCAGGGAGATTAAAGAGGGTGACTCTGTTATAGTGGATGCCGATTCTGATGGAAATGTGATTGTGCTCAATGGTAGCAGTGGTGCTCCAGATTCATTGCCAGAAGCTCTTCCAGTGTAG 2775 0.4468 MSRVLAQSINIPGLVAGRRHGNNTNGSVRSRRSVRMAYATRIVAPRLTAFSGLNSLDSMLRPGQAFHSKVLTQIGGTNRPKGGRGSRCVTRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGEGADSVGATVGSGSSNNKMPTLEEFGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVSETIQILKGLRERYEIHHKLRYTDDALVAAAELSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARGLEKEVRQIIKEKDEAVRNQEFEKAGELRDKEMDLKTQISALIEKNKEMSKAESEAGDVGALVTEVDIQHIVAAWTGIPVDKVSVDESDRLLKMEETLHKRIIGQHEAVEAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKTLASYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELSVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLSREIKEGDSVIVDADSDGNVIVLNGSSGAPDSLPEALPV 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00543 924 SMART ClpB_D2_small_2 817 907 IPR019489 -
Tsu02g00543 924 ProSitePatterns Chaperonins clpA/B signature 1. 389 401 IPR018368 GO:0005524
Tsu02g00543 924 Pfam ATPase family associated with various cellular activities (AAA) 299 415 IPR003959 GO:0005524|GO:0016887
Tsu02g00543 924 ProSiteProfiles Clp repeat (R) domain profile. 94 236 IPR004176 -
Tsu02g00543 924 Gene3D - 590 815 IPR027417 -
Tsu02g00543 924 ProSiteProfiles UVR domain profile. 511 546 IPR001943 GO:0005515
Tsu02g00543 924 ProSitePatterns Chaperonins clpA/B signature 2. 671 689 IPR028299 -
Tsu02g00543 924 Gene3D - 244 437 IPR027417 -
Tsu02g00543 924 SMART AAA_5 294 434 IPR003593 -
Tsu02g00543 924 SMART AAA_5 637 818 IPR003593 -
Tsu02g00543 924 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 77 924 - -
Tsu02g00543 924 CDD AAA 611 759 - -
Tsu02g00543 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 533 IPR027417 -
Tsu02g00543 924 Coils Coil 348 368 - -
Tsu02g00543 924 Gene3D UVR domain 503 561 - -
Tsu02g00543 924 Pfam AAA domain (Cdc48 subfamily) 636 810 IPR003959 GO:0005524|GO:0016887
Tsu02g00543 924 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 748 762 IPR001270 GO:0005524
Tsu02g00543 924 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 641 659 IPR001270 GO:0005524
Tsu02g00543 924 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 715 733 IPR001270 GO:0005524
Tsu02g00543 924 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 686 704 IPR001270 GO:0005524
Tsu02g00543 924 Gene3D - 440 583 - -
Tsu02g00543 924 Pfam Clp amino terminal domain, pathogenicity island component 108 160 IPR004176 -
Tsu02g00543 924 Pfam Clp amino terminal domain, pathogenicity island component 184 235 IPR004176 -
Tsu02g00543 924 PANTHER ATP-DEPENDENT CLP PROTEASE 77 924 - -
Tsu02g00543 924 CDD AAA 277 429 - -
Tsu02g00543 924 Pfam C-terminal, D2-small domain, of ClpB protein 817 897 IPR019489 -
Tsu02g00543 924 Pfam AAA lid domain 438 539 IPR041546 -
Tsu02g00543 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 586 903 IPR027417 -
Tsu02g00543 924 Gene3D - 817 914 - -
Tsu02g00543 924 SUPERFAMILY Double Clp-N motif 95 235 IPR036628 -
Tsu02g00543 924 Gene3D - 93 240 IPR036628 -
Tsu02g00543 924 Coils Coil 507 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00543 Tsu-Chr2 4577253 4582767 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00543 K03696 - gmx:100804035 1594.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00543 02 4577253 4582767 Tsu07g01178 07 10059260 10067604 ECH
Tsu02g00543 02 4577253 4582767 Tsu02g00543 02 4577253 4582767 ECH
Tsu02g00543 02 4577253 4582767 Tsu07g01178 07 10059260 10067604 PCT