LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g00510	ATGGGAGAGGAAGAAAAGAAACCAGAGGAAACCAAAGTAGAGGAGAAAAAAACAGAGGAaccaaagaaagaagaagagaaaaaagaagctGACAAACCCACCGAAGACAAAAAACCGGATGAATCTAAGGAACAAACTCCACCACCGCCGCCGCCAGAAATTGTGCTTAAAGTTTTCATGCATTGTGAAGGTTGTGCTCGCAAAGTTCGTCGTTCACTCAAAGGATTTCCAGGTGTTGAAGATGTTGTTACTGATTGCAAATCTCACAAGGTTGTTGTTAAAGGAGAAAAAGCGGATCCATTGAAGGTTCTAGAAAGAGTACAGAGAAAGAGTCATAGACAAGTTGAACTTCTTTCTCCGATCCCAAAACCACCTtcagaagaagagaaaaaaccTGAAGAGAAAGAAAAGCCTAAAccagaagaagagaagaaagaagagCCTAAGATTACCATAGTGACTCTGAAAgttcacatgcattgtgaagcTTGTTCACAAGAAATCAAGAGACGCATTGAGAGAATCAAAGGAGTGGAATCAGCTGAACCGGATCTGAAGAACTCAATAGTGACAGTGAAAGGAGTGTTTGAAACTGATAAATTAGTTGAATATGTTTACAAAAGAACCGGAAAACATGCGGTTATAGTGAAACAAGAGGCAGAGAAAAAAGAGGAAGCAAAAGAAAccaaagaagaagagaaaaaactGTGGAAGGTGAAAAGGAACAGAAAGGAAGTGGTGAAGGAGAGGAAAAGAAAGAAGCTGCTGCAGAGGGAGATGGAAAATCAAGTGATGCTGCTGCAGAAGAAACGAAGGTGGTGGAATTGA	828	0.3527	MGEEEKKPEETKVEEKKTEEPKKEEEKKEADKPTEDKKPDESKEQTPPPPPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDVVTDCKSHKVVVKGEKADPLKVLERVQRKSHRQVELLSPIPKPPSEEEKKPEEKEKPKPEEEKKEEPKITIVTLKVHMHCEACSQEIKRRIERIKGVESAEPDLKNSIVTVKGVFETDKLVEYVYKRTGKHAVIVKQEAEKKEEAKETKEEEKKLWKVKRNRKEVVKERKRKKLLQREMENQVMLLQKKRRWWN	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g00510	275	ProSiteProfiles	Heavy-metal-associated domain profile.	159	205	IPR006121	GO:0046872
	Tsu02g00510	275	MobiDBLite	consensus disorder prediction	123	148	-	-
	Tsu02g00510	275	Pfam	Heavy-metal-associated domain	154	210	IPR006121	GO:0046872
	Tsu02g00510	275	Pfam	Heavy-metal-associated domain	56	109	IPR006121	GO:0046872
	Tsu02g00510	275	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	1	265	-	-
	Tsu02g00510	275	SUPERFAMILY	HMA, heavy metal-associated domain	150	215	IPR036163	GO:0046872
	Tsu02g00510	275	Coils	Coil	213	259	-	-
	Tsu02g00510	275	Gene3D	-	149	216	-	-
	Tsu02g00510	275	MobiDBLite	consensus disorder prediction	1	55	-	-
	Tsu02g00510	275	ProSiteProfiles	Heavy-metal-associated domain profile.	60	116	IPR006121	GO:0046872
	Tsu02g00510	275	CDD	HMA	154	213	IPR006121	GO:0046872
	Tsu02g00510	275	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	1	265	IPR044577	GO:0046872
	Tsu02g00510	275	SUPERFAMILY	HMA, heavy metal-associated domain	55	110	IPR036163	GO:0046872
	Tsu02g00510	275	Gene3D	-	51	123	-	-
	Tsu02g00510	275	MobiDBLite	consensus disorder prediction	1	44	-	-
	Tsu02g00510	275	MobiDBLite	consensus disorder prediction	111	148	-	-
	Tsu02g00510	275	CDD	HMA	60	116	IPR006121	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g00510	Tsu-Chr2	4260388	4262281	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g00510	-		-	gmx:100814726	264.233

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu02g00510	02	4260388	4262281	Tsu07g01147	07	9769532	9771344	ECH
	Tsu02g00510	02	4260388	4262281	Tsu02g00510	02	4260388	4262281	ECH
	Tsu02g00510	02	4260388	4262281	Tsu07g01147	07	9769532	9771344	PCT