Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00499 ATGTCTCtcatcaaaatatcattgtcTATGTTAGCTCTATGCTTGGTATCTGCACAAGCAGCAAGGTTTGACATAGTAAACCAATGTTCCTACACCGTCTGGCCAGCAGCAACACCCAGCGGCGGAGGCCGGCAGCTGAACTCAGGCCAAACATGGAGCATTGACATCCCAGCTGGAACTTCATCTGGCCGAGTTTGGGGCCGAACCGGTTGCAGCTTCGACGGCTCAGGCCGTGGAAGTTGTCAAACCGGTGATTGCGGTGGCGCCTTAAGTTGTACCTTATCTGGTCAACCTCCACTCACCCTTTCTGAATTCACACTTAACGGTGGAAACAATTTGGATTACATAAACTTATCTGTGATTGATGGTTTCAATGTTCCAATGCAATTTAGTTCAACTTCTAATGGATGCAACGCAGCAAGATTCGACATAGTAAACCGATGTCCCTACACAGTTTGGCCAGCAGCCATTCCCAAAGGCGGTGGCCGACAGTTGAATTCGGGCCAAACATGGCCCCTAGACATCCCAGCTGGAACATCAGCAGCGCGAATTTGGGGCAGAACCGGTTGCAGCTTCGACGCTTCAGGCCGTGGTAGTTGTCAAACCGGTGATTGCGGTGGTGCCCTTAGTTGCAGCTTATCTGGCAAATCTCCAACCACCCTTGCTGAATTCTCACTTAATGCCGGAAATAATAAGGACTACATTGATTTGTCTGTAATTGATGGTTTCAACATTCCAATGCAATTTAGTTCAACCTCTAATGGGTGCAACAAAGTATTAAACTGCAGGGATTCTAATTGCCCTGATGCTTATCATCAACCCAATGATGTTAAAACTGTTTCATGCCCCGGTGGTACCAACTATAGAATCATCTTTTGCCCTTAA 885 0.4655 MSLIKISLSMLALCLVSAQAARFDIVNQCSYTVWPAATPSGGGRQLNSGQTWSIDIPAGTSSGRVWGRTGCSFDGSGRGSCQTGDCGGALSCTLSGQPPLTLSEFTLNGGNNLDYINLSVIDGFNVPMQFSSTSNGCNAARFDIVNRCPYTVWPAAIPKGGGRQLNSGQTWPLDIPAGTSAARIWGRTGCSFDASGRGSCQTGDCGGALSCSLSGKSPTTLAEFSLNAGNNKDYIDLSVIDGFNIPMQFSSTSNGCNKVLNCRDSNCPDAYHQPNDVKTVSCPGGTNYRIIFCP 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00499 294 PANTHER OS03G0233200 PROTEIN 10 137 IPR001938 -
Tsu02g00499 294 CDD TLP-P 142 294 - -
Tsu02g00499 294 ProSiteProfiles Thaumatin family profile. 139 294 IPR001938 -
Tsu02g00499 294 ProSitePatterns Thaumatin family signature. 77 92 IPR017949 -
Tsu02g00499 294 Gene3D Thaumatin 142 294 IPR037176 -
Tsu02g00499 294 PANTHER OS03G0233200 PROTEIN 137 294 IPR001938 -
Tsu02g00499 294 SUPERFAMILY Osmotin, thaumatin-like protein 21 136 IPR037176 -
Tsu02g00499 294 SMART tha2 142 294 IPR001938 -
Tsu02g00499 294 SMART tha2 23 139 IPR001938 -
Tsu02g00499 294 ProSiteProfiles Thaumatin family profile. 20 141 IPR001938 -
Tsu02g00499 294 PIRSF PR5 262 294 IPR001938 -
Tsu02g00499 294 PIRSF PR5 133 265 IPR001938 -
Tsu02g00499 294 PIRSF PR5 1 141 IPR001938 -
Tsu02g00499 294 SUPERFAMILY Osmotin, thaumatin-like protein 140 294 IPR037176 -
Tsu02g00499 294 Pfam Thaumatin family 146 260 IPR001938 -
Tsu02g00499 294 Pfam Thaumatin family 27 139 IPR001938 -
Tsu02g00499 294 PANTHER THAUMATIN-LIKE PROTEIN 10 137 - -
Tsu02g00499 294 PANTHER THAUMATIN-LIKE PROTEIN 137 294 - -
Tsu02g00499 294 PRINTS Pathogenesis-related protein signature 141 153 IPR001938 -
Tsu02g00499 294 PRINTS Pathogenesis-related protein signature 284 293 IPR001938 -
Tsu02g00499 294 PRINTS Pathogenesis-related protein signature 183 194 IPR001938 -
Tsu02g00499 294 PRINTS Pathogenesis-related protein signature 161 170 IPR001938 -
Tsu02g00499 294 PRINTS Pathogenesis-related protein signature 196 225 IPR001938 -
Tsu02g00499 294 PRINTS Pathogenesis-related protein signature 233 249 IPR001938 -
Tsu02g00499 294 Gene3D Thaumatin 20 141 IPR037176 -
Tsu02g00499 294 ProSitePatterns Thaumatin family signature. 196 211 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00499 Tsu-Chr2 4168019 4170692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00499 120 247 Receptor kinase-like Gene Family AT5G38280 38.028 6.70e-23 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00499 - - mtr:MTR_8g096910 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00499 02 4168019 4170692 Tsu02g00499 02 4168019 4170692 ECH
Tsu05g00290 05 2155942 2156997 Tsu02g00499 02 4168019 4170692 PCT