Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00463 ATGGTTACTCGACGGTTCATTTCCACCAGCGACGATGAAGACGATTCACCACCACCGCCTCCTTCCAACAACCTCACTGACAACAACCCTACCAACAACCGCAAAAGGAAGACCATGAAGCTTccggaagaagatgaagatgatgaagtagAAGAACAATTGCCGCCAAAcgagaaaaagaagaagtccAATGACAATGAAGAGagtcatgatgatgatgagagtGAGGAAGAGGAACCTtcaagtgaagaagaagatgattcgCCAGTTGAAGATGCTAAACCCATTGGTGAACCAATTAGGGTTTCTGGAAAAGGAAGAGGCAGAAAAAAGCATTTCCACTCATTCGAATTCGACGGCGATCAATACAATCTGGAGGACCCTGTGCTTCTTGTGCCGGAAGTTAAAGATCAAAAGCCGTATGTGGCAATTATTAAGGACATTACACAATCCCTAAGTGGAAGCTTGATGATCACAGGGCAGTGGTTTTACCGTCCAGATGAAGCAGAAAAAAAAGGCGGTGGTAGCTGGCAATCGAATGACACCAGAGAGCTGTTTTATAGTTTCCACCGAGATGACGTTCCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCAACTCGTAAGCAGTACCCTGGGTTTATTGTGCAGAAGGTGTATGACACAGATGAAATGAAATTATGGAAACTAACTGATAAGGACTATGAGGACAGTAATCAACAAGAAATTGATGAGCTTGTTCAGAAAACTCTTCAACGTTTGGGTGACCTACCTGACATTGAGACTGATGAAGCTCCCATTGATCAGGAAGATCTGATGAGAAGTAAAAGATTCTTGAAGAAAAAGAGTATTTCACATCTTGATGTTTTAAGGGAGGACGAAACATCTCCAAAGAGTTTCCAACATCTGAAACCTGAAACACCAGGGAGTACCTCAGAGCATTATCGCATATTAGTGAAATTTAATGCACTAACAGGAGATACCCATCGTGACAAAGGTTTGGTGATGTTGCTTCAAAATGTTCAATACTTGTTTGATACTGATGACATCGGAAAGAAAAAGGACAAATGCAGTGACAATTCTGATGCAATCAACACTGAAAGCAAGAACAAAAGTTCTGAAATAGCAAATGAATCTAAAGACAAAGTTCTGAAGAATTCCAAGTCTTTTGTCTGGCCAGATGTTGCTGTTCGAGCTGTAGTTGCTCTGGAGAAAGCTTCGCACGATACATTTTCATCAGATTATCAGAAGTACAGCCAAAAGCTGCGGCAATTAGCATTTAATCTCAAGAACAATGCATTTCTATTACGCCGTCTATTAGATGGAGAGCTAGAACCTTTAAAAATATTGAGTATGACACCTACTGAATTGAAGGAGGGTTTGATTGCTGAGGAAATATCCAAGAATGAGCCCGACGAGCCGCAGCACATGCAGATGACGGATGCTCGCTGCAAACTTTGCTCAGAGCGTACAGTGGGCGTGAGGGATATTATCCGTGCAGGACATGCTGACCGATATATGCTGGAATGCACCTCTTGTGGTCATTCCTGGTCTGCCTCTCGTGATGCGGTGTCTGTTCTGACATTAGATGCATCAGATTCAAAAAGAAATGTAGGCTCAGCCCCATGGGCTACTGCAAAATTTGAAGATGTTGGGAAGAAGTTGGTGAGTCCCCGTGACTCTGACAAGTCGACCAATGACATCTTTATGCCACCTGTATTGGAAGCCCAGAAATCGTTTGGCAAGTCCAGGAAAGATGAAAATGTTGAAGCTTCAAGACGTGCTGACTAG 1818 0.4081 MVTRRFISTSDDEDDSPPPPPSNNLTDNNPTNNRKRKTMKLPEEDEDDEVEEQLPPNEKKKKSNDNEESHDDDESEEEEPSSEEEDDSPVEDAKPIGEPIRVSGKGRGRKKHFHSFEFDGDQYNLEDPVLLVPEVKDQKPYVAIIKDITQSLSGSLMITGQWFYRPDEAEKKGGGSWQSNDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPTRKQYPGFIVQKVYDTDEMKLWKLTDKDYEDSNQQEIDELVQKTLQRLGDLPDIETDEAPIDQEDLMRSKRFLKKKSISHLDVLREDETSPKSFQHLKPETPGSTSEHYRILVKFNALTGDTHRDKGLVMLLQNVQYLFDTDDIGKKKDKCSDNSDAINTESKNKSSEIANESKDKVLKNSKSFVWPDVAVRAVVALEKASHDTFSSDYQKYSQKLRQLAFNLKNNAFLLRRLLDGELEPLKILSMTPTELKEGLIAEEISKNEPDEPQHMQMTDARCKLCSERTVGVRDIIRAGHADRYMLECTSCGHSWSASRDAVSVLTLDASDSKRNVGSAPWATAKFEDVGKKLVSPRDSDKSTNDIFMPPVLEAQKSFGKSRKDENVEASRRAD 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00463 605 SUPERFAMILY Elongation factor TFIIS domain 2 401 467 IPR036575 GO:0006351
Tsu02g00463 605 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 601 - -
Tsu02g00463 605 MobiDBLite consensus disorder prediction 564 605 - -
Tsu02g00463 605 Gene3D - 39 229 IPR043151 -
Tsu02g00463 605 Gene3D - 327 468 IPR036575 GO:0006351
Tsu02g00463 605 MobiDBLite consensus disorder prediction 53 68 - -
Tsu02g00463 605 CDD BAH_plant_3 103 249 - -
Tsu02g00463 605 MobiDBLite consensus disorder prediction 69 91 - -
Tsu02g00463 605 MobiDBLite consensus disorder prediction 1 109 - -
Tsu02g00463 605 MobiDBLite consensus disorder prediction 362 382 - -
Tsu02g00463 605 ProSiteProfiles TFIIS central domain profile. 338 494 IPR003618 GO:0006351
Tsu02g00463 605 Pfam Transcription factor S-II (TFIIS), central domain 334 482 IPR003618 GO:0006351
Tsu02g00463 605 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 601 - -
Tsu02g00463 605 Pfam BAH domain 122 237 IPR001025 GO:0003682
Tsu02g00463 605 ProSiteProfiles BAH domain profile. 121 240 IPR001025 GO:0003682
Tsu02g00463 605 SMART mid_6 371 476 IPR003618 GO:0006351
Tsu02g00463 605 MobiDBLite consensus disorder prediction 588 605 - -
Tsu02g00463 605 SMART BAH_4 121 240 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00463 Tsu-Chr2 3879588 3884767 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00463 - - cam:101501082 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00463 02 3879588 3884767 Tsu02g00463 02 3879588 3884767 ECH