Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00455 atggctttgccatttatTACTCTTCCACACTTCATTTCTCCAACAATCACTCTAAAACCCAAACACTTCCTTAACCCATTTCCTTCTACACATTTCTTCCGTCCCTTATCTTCTTATCCTTTACTTCCTCTTCAAACTCCCGCCGCTATCAAATCCAAAGGACAATCCTATCCAAACCCAGCCGACGATGACCCGCCCGAAATACCCGAAGATTCCGCTCACGGCTTCTCCAAATTCCAACAAATTCAAATCCAAGCCGACCGAGCTCGTAAACGCGAAGAGCAAGATTACAAAGAAAATCAAGCCACTTACATCGCCGCCATCGCCGACGTAGAAGATGCTCCCAATAATCCTTCCTCTATCGAATCCGCTCAAGACGATTTGTTCGGTGAAATCGACAAAGCAATTGCTCTTAAGCGTAAAGAGTTCGTTAAACAAGGTCTTCTTAAACCTAATCCCGCTAAACAGGACATTGAAGTAGTTGACGAGCTTCAACCTGATGAAGTTGGTGATGTTGAAGAAATTGAGAAACTCAAGGGACTTGCGGTGAATTCTGATGAAATCGATGAAGATGGTAATTTATCTTCGAAATCCGATTCGTTTGATTTAGATTTTGATAGtttagagaagaaaaataataaaactagaATAGTTGAACCTAAGTTTAAGATGAGTTTAGCTGAGCTTTTAGATGAGAGTAAGGTAGTTCCTATTTCGGTTTATGGAAATTTGGAAGTTGAAATCAGTGGAATTCAACACGATTCGAGGCTTGTAACTTCTggtaatttgtttgtttgttgtgttggaagaaaaaacGATGGACACTCGTTCTTAAGTGAGGCTGATAAGAGAGGAGCTATTGCTGTTGTTGCGAGTAAAGAAATTGATATTGAAGATACTTTGGGTTGTAAGGCTTTGGTTATTGTGGAAGATACCAATGCTGTTCTTCCTACATTGGCTGCTTCGTTTTATAAGTATCCTTCGACAAATATGGCTGTTATTGGAATAGCTGGGACTTATGGAAAAACAACTACCActtatttgattaaaagtatgtaTGAAGCGATGGGTTTACGCACTGGGATGTTTAACTCCATTGCTAGTTATGTGCATGGGGATAATGAGTTGGATTCGCCTTATGAGATGATGGATGCTGTTTTGGTTCAGAATTTGATGGCTAAGATGCTTCAAAATGGAACTGAATCTGTGGTTTTTGAGGCTTCTTCTCGTGGACTGGCTCAGGGGAAATACGATGAGGTTGATTTTGATGTTGCTGTTTTTACGAATTTGTTGACCGAGGAGGATGAGGAGGAGGAAAGAGATGCCAATGCTAAGCTGTTTTCGAGGATGGTGGATCCTGAGCGGCATAGGAAAGTTGTTAACATTGATGATCCGAATGCGCCTTTTTTCGTTTCATTGGGCAGTCCTGAAGTTCCTGTTGTGACATTTGCTTTGGAGAATAAAAATGCAGATGTTCATCCCTTGAAATTTGAACTTTCTCTGTTTGAGACACAGGTGTTGGTTAATACACCTGCTGGGATACTGGAAATTTCATCGGGATTATTAGGAAAGCATAATGTTTATAACATTCTTGCTGCTGTGGCAGTTGGCATTGCTGTTGGGGCACCCTTGGAGGACATTGTTAGAGGGATTGAAGAGGTTGATGCAGTTCCTGGGAGGTGTGAGTTAATTGATGAGGAACAAGCATTTGGGGTAATAGTGGACTATGCTCGTACTCCTGATGCCTTGTCTAGATTACTTGATTCTGTAAGAGAGCTTCAACCTCGCAGGATTATAACCGtgATTGGTTGTTGTGGTGAGGATGAAAGGGGGAAGAGACCCCTGATGACAAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTGACATCTGACAATCCCAAGGGTGAAGATCCATTGGATATTTTGGACGACATGTTGGCTGGGATAGGATGGACAATGCAAGAGTACCTGAAATATGGAGAAAATGACTACTATCCTCCTCTTCGAAATGGTCATAGGCTTTTTCTCCATGACATCAGGAGGGTAGCTGTGCGAGCTGCAGTTGCAATGGGGGAGGAGGGTGATGTTGTTGTGATTGCTGGCAAAGGCCATGAAATATGTCAAATAGAAGGTGAAAAGAGGGATTTCTTCGATGACCGAGACGAGTGCAGGGAGGCATTGCAGTTCGTTGACGACCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTACCAGAGAGCCACTAA 2259 0.4086 MALPFITLPHFISPTITLKPKHFLNPFPSTHFFRPLSSYPLLPLQTPAAIKSKGQSYPNPADDDPPEIPEDSAHGFSKFQQIQIQADRARKREEQDYKENQATYIAAIADVEDAPNNPSSIESAQDDLFGEIDKAIALKRKEFVKQGLLKPNPAKQDIEVVDELQPDEVGDVEEIEKLKGLAVNSDEIDEDGNLSSKSDSFDLDFDSLEKKNNKTRIVEPKFKMSLAELLDESKVVPISVYGNLEVEISGIQHDSRLVTSGNLFVCCVGRKNDGHSFLSEADKRGAIAVVASKEIDIEDTLGCKALVIVEDTNAVLPTLAASFYKYPSTNMAVIGIAGTYGKTTTTYLIKSMYEAMGLRTGMFNSIASYVHGDNELDSPYEMMDAVLVQNLMAKMLQNGTESVVFEASSRGLAQGKYDEVDFDVAVFTNLLTEEDEEEERDANAKLFSRMVDPERHRKVVNIDDPNAPFFVSLGSPEVPVVTFALENKNADVHPLKFELSLFETQVLVNTPAGILEISSGLLGKHNVYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDYARTPDALSRLLDSVRELQPRRIITVIGCCGEDERGKRPLMTKIATDKSEVTMLTSDNPKGEDPLDILDDMLAGIGWTMQEYLKYGENDYYPPLRNGHRLFLHDIRRVAVRAAVAMGEEGDVVVIAGKGHEICQIEGEKRDFFDDRDECREALQFVDDLHQAGIDTSEFPWRLPESH 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00455 752 SUPERFAMILY MurD-like peptide ligases, catalytic domain 327 554 IPR036565 GO:0005524|GO:0009058
Tsu02g00455 752 Gene3D - 225 325 - -
Tsu02g00455 752 Pfam Mur ligase family, catalytic domain 247 324 IPR000713 GO:0009058|GO:0016881
Tsu02g00455 752 PANTHER UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE MURE HOMOLOG, CHLOROPLASTIC 200 742 - -
Tsu02g00455 752 PANTHER MUR LIGASE FAMILY MEMBER 200 742 - -
Tsu02g00455 752 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 557 729 IPR036615 GO:0009058|GO:0016881
Tsu02g00455 752 Pfam Mur ligase family, glutamate ligase domain 557 640 IPR004101 GO:0009058|GO:0016881
Tsu02g00455 752 Gene3D - 562 738 IPR036615 GO:0009058|GO:0016881
Tsu02g00455 752 Gene3D - 327 560 IPR036565 GO:0005524|GO:0009058
Tsu02g00455 752 SUPERFAMILY MurE/MurF N-terminal domain 224 327 IPR035911 -
Tsu02g00455 752 Pfam Mur ligase middle domain 336 536 IPR013221 GO:0005524|GO:0009058|GO:0016881
Tsu02g00455 752 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 224 728 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Tsu02g00455 752 MobiDBLite consensus disorder prediction 51 73 - -
Tsu02g00455 752 TIGRFAM murE: UDP-N-acetylmuramyl-tripeptide synthetase 246 729 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00455 Tsu-Chr2 3825584 3829826 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00455 - - mtr:MTR_8g098345 1228.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00455 02 3825584 3829826 Tsu02g00455 02 3825584 3829826 ECH