Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00408 ATGGAACAGAAAAGCTTGCTGATATCAGCTCTAAGTGTTGGTGTTGGAGTTGGAGTTGGAATTGGATTAGCTTCTGGACAAACTGTTTCTAAATGGGGAGGAGGAACTACTTCTTCTTTCTCATCTTCAAACTCTTTTATTACTGCTGATCAAATTCAACATGAAATGCTCCGTTTAATTGTTGATGGCAGAGATAGCAACGTTACTTTTGATAAATTCCCTTATTACCTAAGTGAGCAAACACGAGTTTTGTTGACAAGTGCTGCTTATGTTCATTTAAAGCATGCTGAAGTTTCTAAATATACGCGTAATCTTGCTCCTGCTAGCAGAACTATTCTTCTCTCTGGCCCTGCTGAACTCTACCAACAAGTGCTTGCCAAGGCTTTAGCTCATTACTTTGAGGCCAAATTGCTTCTCTTGGATTTAACCGACTTTTCATTGAAGGTGAGTGTTACatgtttttattcattttactcTTTTCAATTTTGTTCTTTCAAAAGATCCACTTCAGAGTCAACTTTGGAGAAGCTATCTGATCTATTTGGGTCATTTTCAATCTTTCAACAAAGAGAGGAACCTAAAGTTGCAGGAAAAATGCACAGGCAAAGCAGTGGAATGGACCTACAATCAATGGGTAATGAAGCATCTTGTAATCCTCCAAAGCTCCGTAGGAacgcttcttcttcttcaaatatTAGTGGCCTTACTTCGCAAAGCAATCCTACAAATTCAGCTCCTTTGAAGCGCACAGCCAGCTGGTCTTTTGATGAAAAACTACTTATACAGTCTCTTTACAAGGTTCTACTGTCTGTGTCTAAAACCTATCCAATTGTGCTATATCTGAGGGATGTTGATAGGTTATTAAGTAGATCACAGAAGATATATAACATGTTCCAAAACATGTTGAAGAAACTTTCTGGACCGATTCTGATTCTTGGTTCGCGAGTTCTAGATTCTAGTAATGAATTTGAAGAGCCGGATGAGAAACTTACTTTGCTCTTCCCGTACGATATAGAAATAAGACCTCCAGAAGATGAAACACATCTTGTCAGCTGGAAGTCTCAATTGGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAAGAATCATATCACGGAAGTGCTTGCAGCCAATGATCTTGATTGCGATGACTTGGATTCCATCTGTGTGGAAGACACAATGGTTCTCAGTAACTATATAGAAGAAATTATTGTGTCAGCAATCTCTCATCATTTGATGAAAAACAGAGACCTTGAATATAGAAATGGAAAGCTAATTATTTCTTGCAATAGTTTGTCGCATGCACTGGGTATATTCCGAAAGGGGAAATTCAGTGGAAGTGATACATCAAAATTGGAAGATCAAGCTCCAAAAtctgagATTCCAAGTGTGGTAGAAACTGTTGCGAAACCAGCAGCGAAGGCTGAAAGTGCTGCTGCTCCGGAAAAAAAGGCTGAAGCAGAAATATCAACTTCAGCGGCAAAGACAGGTGTTGAAAAATCAGTTACACCATCAAAAGCTCCTGAAGTTGCTCCTGATAATGAATTTGAGAAGCGAATAAGGCCTGAAGTTATACCAGCAAATGAGATTGACGTCACATTCGCTGATATTGGTGCCTTAGAAGAGACAAAAGAATCCCTTCAAGAACTAGTAATGCTTCCTCTCCGAAGGCCGGACCTTTTCACCGGAGGACTTCTAAAGCCATGCAGAGGAATATTGCTATTTGGACCTCCTGGAACTGGAAAGACAATGCTAGCAAAAGCCATTGCAAAAGAAGCTGGAGCAAGTTTCATTAACGTGTCTATGTCTACCATCACATCTAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTCACCCTTGCAGCCAAAGTCTCTCCTactattatatttgttgatgaGGTTGATAGCATGCTTGGGCAAAGAACCAGAGTTGGGGAGCATGAAGCCATGCGGAAAATAAAGAATGAATTTATGTCTCATTGGGATGGGCTCACAACAAAACAAGGAGAGCGCATCCTTGTTCTTGCAGCAACCAATAGGCCATTTGACCTGGATGAAGCTATTATAAGGCGATTCGAAAGGAGAATTATGGTAGGGCTACCATCTGTTGAGAACAGGGAAAAGATTCTAAGGACACTTTTGGGAAAAGAAAAGGTGGACAAGGAAATTGATTTTAAGGAACTAGCCACCATGACAGAAGGATATACCGGAAGTGATCTAAAGAACTTTTGCACAACTGCTGCTTATCGACCTGTTCGAGAGTTGATTCAGCAAGAGAGATTAAAGGATCTGgATAAGAAACAGAAAGCTAcgaaggaacaaaacaaaaatactgAAGAAGCGAAAGAGGAAATTCAAAAAGAAAGAGTTATTACCCTGAGGCCATTGAATATGCAGGATTTCAAAGAGTCTAAGAAACAGGTTGCTGCAAGCTTTTCTGCTGAGGGTGCTGGAATGGGTGAGTTGACTCAGTGGAATGAGTTGTATGGAGAAGGTGGTTCTAGGAAGCAAAAGCAGTTGTCATATTTCCTGTGA 2547 0.3899 MEQKSLLISALSVGVGVGVGIGLASGQTVSKWGGGTTSSFSSSNSFITADQIQHEMLRLIVDGRDSNVTFDKFPYYLSEQTRVLLTSAAYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKVSVTCFYSFYSFQFCSFKRSTSESTLEKLSDLFGSFSIFQQREEPKVAGKMHRQSSGMDLQSMGNEASCNPPKLRRNASSSSNISGLTSQSNPTNSAPLKRTASWSFDEKLLIQSLYKVLLSVSKTYPIVLYLRDVDRLLSRSQKIYNMFQNMLKKLSGPILILGSRVLDSSNEFEEPDEKLTLLFPYDIEIRPPEDETHLVSWKSQLEEDMKMIQVQDNKNHITEVLAANDLDCDDLDSICVEDTMVLSNYIEEIIVSAISHHLMKNRDLEYRNGKLIISCNSLSHALGIFRKGKFSGSDTSKLEDQAPKSEIPSVVETVAKPAAKAESAAAPEKKAEAEISTSAAKTGVEKSVTPSKAPEVAPDNEFEKRIRPEVIPANEIDVTFADIGALEETKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTMLAKAIAKEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMSHWDGLTTKQGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLGKEKVDKEIDFKELATMTEGYTGSDLKNFCTTAAYRPVRELIQQERLKDLDKKQKATKEQNKNTEEAKEEIQKERVITLRPLNMQDFKESKKQVAASFSAEGAGMGELTQWNELYGEGGSRKQKQLSYFL 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00408 848 CDD AAA 571 704 - -
Tsu02g00408 848 Pfam AAA+ lid domain 727 769 IPR041569 -
Tsu02g00408 848 Gene3D - 705 810 - -
Tsu02g00408 848 Gene3D - 532 818 IPR027417 -
Tsu02g00408 848 SMART AAA_5 569 706 IPR003593 -
Tsu02g00408 848 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 848 - -
Tsu02g00408 848 MobiDBLite consensus disorder prediction 192 246 - -
Tsu02g00408 848 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 848 - -
Tsu02g00408 848 MobiDBLite consensus disorder prediction 203 246 - -
Tsu02g00408 848 MobiDBLite consensus disorder prediction 768 790 - -
Tsu02g00408 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 532 772 IPR027417 -
Tsu02g00408 848 Pfam ATPase family associated with various cellular activities (AAA) 573 703 IPR003959 GO:0005524|GO:0016887
Tsu02g00408 848 ProSitePatterns AAA-protein family signature. 676 695 IPR003960 GO:0005524|GO:0016887
Tsu02g00408 848 MobiDBLite consensus disorder prediction 476 515 - -
Tsu02g00408 848 Coils Coil 765 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00408 Tsu-Chr2 3416401 3422606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00408 533 765 Calmodulin-binding Proteins AT3G56690 38.983 3.89e-43 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00408 - - mtr:MTR_8g099065 1430.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00408 02 3416401 3422606 Tsu02g00408 02 3416401 3422606 ECH
Tsu05g00247 05 1809685 1815372 Tsu02g00408 02 3416401 3422606 PCT