Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00375 ATGACTACCGACCGTCATGCTTACAAGGTTGATCCAAGTAATCCCGGGTCGGATCTTGCCGGAGAAACTGCCGCTGCTATGGCTGCTGCTTCCATTGTGTTCCGCCGTTCTAATCCTGCTTATTCACATGAACTCCTCCGTCATGCCTATGAGTTGTTTGATTTTGCGGATAAATACAGAGGCAAATATGACAGCAGCATCACAGTTGCACAGAAGTACTACAGATCCATCAGTGGATACAATGATGAATTGCTTTGGGCTGCTGCATGGTTGTATCAAGCATCTAACAACCAATATTACTTGGATTACCTTGGTAGAAATGGTGACTCCATGGGTGGAACTGGTTGGCAAATGACTGAATTCAGTTGGGATGTTAAGTATCCTGGTGTTCAGACTTTAGTTGCTAAGTTCCTGATGCAAGGAAAAGCTGGAGCTCATGCACCAGTGTTTGAGAAATATCTGCAAAAGTCTGAGTATTTCATGTGTTCATGCCTTGGAAAGGGTTCTCACAATGTTCAGAAGACACCTGGTGGACTCATATACCGTCAAAGATGGAACAACTTGCAGTTTGTCACAAGTGCCTCCTTTTTAGCCACTGTCTATTCTGACTACCTTGTTTCTTCTGGTAGAAACTTGAGATGTGATTCCGGCAATGTCCCTTCGTCGGAACTTCTCTCCTTTGCAAAGTCTCAGGTGGACTACATTCTTGGAGACAACCCAAGAGCTACAAGTTACATGGTGGGATATGGAAACAATTTCCCTCAAAGGGTTCACCACAGGGGTTCATCCATTGTTTCAATCAAGGCTAATCCTTCATTTGTCAGCTGCTTTGGAGGTTACAATACTTGGTTTAGCAGCAAAAGGAGCAACACCAATCTACTTACTGGTGCTATTGTTGGTGGACCTGATGCATATGATGACTTTGCTGATGAAAGAAAGAACTATGAACAAACAGAACCAGCAACCTACAACAATGCTCCTCTTTTAGGTGTTCTTGCACGACTCAGTGGCGGTCATGGTGGCTACAACCAGCTCCTTCCAGTTGTTCCAGCTCCTAGGCCCGTTGTTGTTCCAGCTCCTAGACCCATTGTTACCAAGCCAGCTCCTAGACCAGTTATTACCAAGCCACATTCATCTCCCAAACCAAGGATAACTCCAACCCCAGCTTCAAAGTCAGGCCCAATTTCCGTTGAACAGAAAGTAACCAACTCTTGGGTTTCCAAGGGCAGAACATACTATAGATATTCAACAATTGTGACTAACAAATCAACCAAGAATCTCAAGTCTCTCAATCTTTCGATATCCAAGCTTTATGGTCCAATTTGGGGACTCACAAAGTCCGGTGATTCATACACATTCCCAGCATGGGTCAGCTCTTTATCAGCAGGTAAAAGCATTGAATTTGTCTACATCCATTCTACCACTCCAGCAGATGTCTCAGTCGCAAACTACGTGTTGGCCTGA 1464 0.4447 MTTDRHAYKVDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSHELLRHAYELFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWQMTEFSWDVKYPGVQTLVAKFLMQGKAGAHAPVFEKYLQKSEYFMCSCLGKGSHNVQKTPGGLIYRQRWNNLQFVTSASFLATVYSDYLVSSGRNLRCDSGNVPSSELLSFAKSQVDYILGDNPRATSYMVGYGNNFPQRVHHRGSSIVSIKANPSFVSCFGGYNTWFSSKRSNTNLLTGAIVGGPDAYDDFADERKNYEQTEPATYNNAPLLGVLARLSGGHGGYNQLLPVVPAPRPVVVPAPRPIVTKPAPRPVITKPHSSPKPRITPTPASKSGPISVEQKVTNSWVSKGRTYYRYSTIVTNKSTKNLKSLNLSISKLYGPIWGLTKSGDSYTFPAWVSSLSAGKSIEFVYIHSTTPADVSVANYVLA 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00375 487 Pfam Glycosyl hydrolase family 9 3 332 IPR001701 GO:0004553|GO:0005975
Tsu02g00375 487 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 234 260 IPR018221 -
Tsu02g00375 487 PANTHER ENDO-1,4-BETA-GLUCANASE 1 453 - -
Tsu02g00375 487 Gene3D - 1 348 IPR012341 GO:0005975
Tsu02g00375 487 PANTHER ENDOGLUCANASE 1 453 - -
Tsu02g00375 487 SUPERFAMILY Carbohydrate-binding domain 391 479 IPR008965 GO:0030246
Tsu02g00375 487 Pfam Carbohydrate binding domain CBM49 395 472 IPR019028 GO:0030246
Tsu02g00375 487 SMART CBM49_2 395 475 IPR019028 GO:0030246
Tsu02g00375 487 MobiDBLite consensus disorder prediction 367 395 - -
Tsu02g00375 487 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 308 326 IPR033126 -
Tsu02g00375 487 SUPERFAMILY Six-hairpin glycosidases 1 349 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00375 Tsu-Chr2 3140549 3146442 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00375 1 487 Glycoside Hydrolase AT1G64390 76.386 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00375 K01179 - gmx:100801949 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00375 02 3140549 3146442 Tsu02g00375 02 3140549 3146442 ECH