Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00346 ATGGCATGCTTTGGTATTTCTGGTAGTACATGTTCTTTTGAGGTATCTTTGGTTAAGTATGAAGGTCTTAGATTCACTCAAAGAATGCAAATGTATTCAGTTGCATGCATGCCAAAAAGATACATTTTAGCTTCAGGAAAGAAATGCAAAACAATTAAAGCCATGGCTTCTCCAACTACAGCAGCACCTAAAAGAGAGAAAGATCCGAAAAAGAGAGTAGTAATAACAGGAATGGGTCTTGTATCAGTCTTTGGAAGTGACATAGATACATTTTACAACAAGCTTTTAGAGGGAGAAAGTGGGATAAGCCTAATAGATAGGTTTGATGCCTCAAGTTTACCTGTCCGTTTTGGTGGTCAGATACGCAATTTCTCTACAAAAGGTTACATCGATGAAAAGAATGACCGGCACCTCGATGATTGCTTGAAGTATTGTTTAGTTTCAGGCAAGCGAGCACTTGAAGATGCTAATCTTGGACATGAAGTCCTTAACACTATGGACAAAACAAGAATAGGAGTTCTAGTGGGAACAGGACTAGGAGGTGTAGCCACTTTTAGCAATGCTGTTCATGCTTTCATTCAAAAGGGACATAGTGAAATTTCTCCATTTTTCATTCCACATTCCATCCCCAACATGAGTTCTGCTTTGTTGGCTATAGAAACTGGCCTAAGGGGACCAAATTATTCCATTTCTACTGCTTGTGCAACAGCAAATTATTGCTTTTGTGCTGCTTCTCATCACATTAGAAGTGGTGAAGTAGATATTATGGTGGTTGGTGGTACTGAAGCTTCGATTATACCTTCTGGTGTTGGAGGATTCATTGCTTGCAGGGCTTTGTCTCAGAGGAATGAAGAACCTAAGAAGGCTTCAAGACCATGGGACAAAAATCGCGATGGTTTTGTCATCGGTGAAGGCTCTGGTGTCCTGATAATGGAGAGCTTGGAGAGTGCAACAAAGAGAGGAGCAAGAATAATTGCTGAATACTTGGGTGGTGCCATAACATGTGATGCTCATCATATGACTGATCCAAGGTCTGATGGATTTGGAGTTTCATCTTGCATAAAAAAGAGTTTAGAAGATGCCGGGGTTTCCATTGAAGAGGTGAACTATGTGAATGCTCATGCCACATCAACACTAGCTGGTGACTTGGCTGAGGTTAATGCAATAAAAAAGGTTTTTAAGGACACATCAGAATTGAAAATGAATGGGACAAAGTCAATGATTGGCCACTGTCTTGGTGCTTCTGGTGGTTTGGAAGCTATAGCAACAATCAAAGCAATAACAACTGGCTGGTTGCATCCAACTATTAACCAAGATAACTTGGAGGATGATGTTACAATTGATACTGTTCCTAATGTTAAGAAAAAGCATGAAGTTAATGTTGCTATCTCCAATTCATTTGGGTTTGGTGGACACAATTCAGTAGTTGTCTTTGCCCCTTTTATGCCCTAA 1452 0.4008 MACFGISGSTCSFEVSLVKYEGLRFTQRMQMYSVACMPKRYILASGKKCKTIKAMASPTTAAPKREKDPKKRVVITGMGLVSVFGSDIDTFYNKLLEGESGISLIDRFDASSLPVRFGGQIRNFSTKGYIDEKNDRHLDDCLKYCLVSGKRALEDANLGHEVLNTMDKTRIGVLVGTGLGGVATFSNAVHAFIQKGHSEISPFFIPHSIPNMSSALLAIETGLRGPNYSISTACATANYCFCAASHHIRSGEVDIMVVGGTEASIIPSGVGGFIACRALSQRNEEPKKASRPWDKNRDGFVIGEGSGVLIMESLESATKRGARIIAEYLGGAITCDAHHMTDPRSDGFGVSSCIKKSLEDAGVSIEEVNYVNAHATSTLAGDLAEVNAIKKVFKDTSELKMNGTKSMIGHCLGASGGLEAIATIKAITTGWLHPTINQDNLEDDVTIDTVPNVKKKHEVNVAISNSFGFGGHNSVVVFAPFMP 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00346 483 CDD KAS_I_II 71 478 IPR000794 -
Tsu02g00346 483 Pfam Beta-ketoacyl synthase, C-terminal domain 326 438 IPR014031 -
Tsu02g00346 483 Gene3D - 39 482 IPR016039 GO:0016746
Tsu02g00346 483 PANTHER POLYKETIDE SYNTHASE-RELATED 34 483 IPR000794 -
Tsu02g00346 483 ProSitePatterns Beta-ketoacyl synthases active site. 225 241 IPR018201 GO:0004315|GO:0006633
Tsu02g00346 483 Pfam Beta-ketoacyl synthase, N-terminal domain 71 317 IPR014030 -
Tsu02g00346 483 TIGRFAM fabF: beta-ketoacyl-acyl-carrier-protein synthase II 71 478 IPR017568 GO:0006633|GO:0016747
Tsu02g00346 483 SMART Beta-ketoacyl synthase 73 483 IPR020841 -
Tsu02g00346 483 PANTHER 3-OXOACYL-(ACYL CARRIER) SYNTHASE II 34 483 - -
Tsu02g00346 483 SUPERFAMILY Thiolase-like 285 479 IPR016039 GO:0016746
Tsu02g00346 483 SUPERFAMILY Thiolase-like 71 322 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00346 Tsu-Chr2 2929986 2933416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00346 47 483 Acyl Lipid Metabolism Gene Families AT5G46290 70.640 0.0 678
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00346 K09458 - gmx:100808453 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00346 02 2929986 2933416 Tsu02g00346 02 2929986 2933416 ECH