Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00341 ATGCCAGGTCTCGTTTCTCCAGGCGGACCTCCGCCCCGTATAACCTTACCCGAAACCCCAACTCAAAGATCCGAACCATCCAAAACACCATCACCACTCCCTAAAAAACCACCCTCTCCTTCACCTTCTCGCTCCAAGAAAAAAACCCCCGAAACCCCAAACAACAACACTTTGCTCTCCGAAGCTTCACTCGATAACCCAGATCTAGGCCCATTCCTTCTCAAAGTAGCCCGTGACACTATCGCATCAGGCGATGGGCCTGCCAAAGCCCTCGACTACGCTATCCGGGCTTCCAAATCATTCGAACGATGCGCTATCGAAGGCGAGCCAAGTCTCGATTTAGCTATGAGCCTACACGTGTTAGCTGCGATTTACTGTAGCTTAAGCCGATTCGAAGAAGCCGTTCCTGTTCTCGAACGCGCTATCCTCGTTCCCAACGTTGAACTCGGCGCCGATCACGCTCTTGCTGCTTTCTCCGGTTATATGCAGTTAGGTGATACTTTTTCTATGTTAGGTCAAGTTGATAAATCAATTTCTTGTTACGATCAAGGTCTTCAGATTCAGATCCAAACCCTAGGTGAAACCGATCCACGCGTCGGTGAAACGTGTCGGTATTTAGCGGAAGCGAATGTTCAGGCGATGCAATTTGATAAAGCGGAAGAGCTTTGTAACAAAACGTTGGAGATTCATCGTGCTCATAGTGAACCTGCTTCTCTCGAAGAAGCTGCAGATCGGAGACTTATGGCTTTGATTTGTGAAGCTAAAGGTGATTATGAATCGGCGTTGGAGCATCTTGTTCTTGCTAGCATGGCGATGATTGCGAATGGTCAAGATAATGAAGTTGCTTCGATTGATGTAAGCATTGGAAATATTTATATGTCGTTGTGTCGATTTGATGAAGCTATTTTTTCTTATCAGAAAGCGCTTACGGTGTTTAAATCTTCGAAAGGAGAAAATCATCCTTCGGTTGCGTCGGTGTTTGTTCGTTTGGCTGATTTGTATCATAGGACAGGGAAGCTCCGTGAATCGAAGTCCTATTGTGAAAATGCCCTTAGAATTTACTCGAAACCGGTTCCTGGAACTACTGCTGAGGAGATTGCCAGTGGTTTGACGGAAGTTTCAGCGATATTTGAATCTGTTGATGATCCGGAGGAAGCGTTGAAGCTTTTGCAGAAGGCGATGAAATTGTTGGAGGATAAACCGGGACAGCAGAGTACAATTGCTGGGATTGAAGCGCGGATGGGAGTGATGTATTATATGATCGGGAAGTATGATGAAGCAAGGAGTGCTTTTGAGAGTGCTGTGTTGAAATTGAGAACTAGCGGGGAAAGGAAATCTGCGTTTTTCGGTGTTGTTTTGAATCAGATGGGTTTGGCTTGCGTGCAATTGTTTAAGATTGATGAAGCTGCTGAATTGTTTGAGGAAGCTAGAGGAATTCTTGAAACAGAATGTGGACCTTGTCATCAAGATACACTTGGAGTATATAGCAATCTTGCAGCAACTTATGATGCAATGGGAAGAGTTGGAGATGCAATTGAAATCTTAGAATATGTGCTGAAGTTGAGGGAAGAGAAGCTTGGAATAGCGAATCCTGATTTTGAAGATGAGAAGCGTCGTTTGGCTGAGTTACTGAAAGAAGCTGGCAAAACACGCGACAGAAAAGCAAAATCTTTGGAAAATCTTATAGATCCAAATTCAAAGAGGACAAAGAAGGAGAGTACCAAGAGGTGGCCTGGTTTGGGGTTTAGAATTTAA 1755 0.4473 MPGLVSPGGPPPRITLPETPTQRSEPSKTPSPLPKKPPSPSPSRSKKKTPETPNNNTLLSEASLDNPDLGPFLLKVARDTIASGDGPAKALDYAIRASKSFERCAIEGEPSLDLAMSLHVLAAIYCSLSRFEEAVPVLERAILVPNVELGADHALAAFSGYMQLGDTFSMLGQVDKSISCYDQGLQIQIQTLGETDPRVGETCRYLAEANVQAMQFDKAEELCNKTLEIHRAHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVASIDVSIGNIYMSLCRFDEAIFSYQKALTVFKSSKGENHPSVASVFVRLADLYHRTGKLRESKSYCENALRIYSKPVPGTTAEEIASGLTEVSAIFESVDDPEEALKLLQKAMKLLEDKPGQQSTIAGIEARMGVMYYMIGKYDEARSAFESAVLKLRTSGERKSAFFGVVLNQMGLACVQLFKIDEAAELFEEARGILETECGPCHQDTLGVYSNLAATYDAMGRVGDAIEILEYVLKLREEKLGIANPDFEDEKRRLAELLKEAGKTRDRKAKSLENLIDPNSKRTKKESTKRWPGLGFRI 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00341 584 Gene3D Tetratricopeptide repeat domain 447 576 IPR011990 GO:0005515
Tsu02g00341 584 SUPERFAMILY TPR-like 81 187 IPR011990 GO:0005515
Tsu02g00341 584 Gene3D Tetratricopeptide repeat domain 63 159 IPR011990 GO:0005515
Tsu02g00341 584 SMART tpr_5 367 400 IPR019734 GO:0005515
Tsu02g00341 584 SMART tpr_5 492 525 IPR019734 GO:0005515
Tsu02g00341 584 SMART tpr_5 158 191 IPR019734 GO:0005515
Tsu02g00341 584 SMART tpr_5 242 275 IPR019734 GO:0005515
Tsu02g00341 584 SMART tpr_5 200 233 IPR019734 GO:0005515
Tsu02g00341 584 SMART tpr_5 282 315 IPR019734 GO:0005515
Tsu02g00341 584 SMART tpr_5 324 357 IPR019734 GO:0005515
Tsu02g00341 584 SMART tpr_5 115 148 IPR019734 GO:0005515
Tsu02g00341 584 SMART tpr_5 408 441 IPR019734 GO:0005515
Tsu02g00341 584 SMART tpr_5 450 483 IPR019734 GO:0005515
Tsu02g00341 584 SUPERFAMILY TPR-like 409 550 IPR011990 GO:0005515
Tsu02g00341 584 MobiDBLite consensus disorder prediction 549 578 - -
Tsu02g00341 584 Gene3D Tetratricopeptide repeat domain 269 446 IPR011990 GO:0005515
Tsu02g00341 584 SUPERFAMILY TPR-like 156 355 IPR011990 GO:0005515
Tsu02g00341 584 Coils Coil 533 553 - -
Tsu02g00341 584 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 25 583 - -
Tsu02g00341 584 MobiDBLite consensus disorder prediction 45 63 - -
Tsu02g00341 584 PANTHER - 25 583 - -
Tsu02g00341 584 ProSiteProfiles TPR repeat profile. 282 315 IPR019734 GO:0005515
Tsu02g00341 584 MobiDBLite consensus disorder prediction 1 64 - -
Tsu02g00341 584 MobiDBLite consensus disorder prediction 1 17 - -
Tsu02g00341 584 MobiDBLite consensus disorder prediction 549 584 - -
Tsu02g00341 584 MobiDBLite consensus disorder prediction 30 44 - -
Tsu02g00341 584 Pfam Tetratricopeptide repeat 452 524 - -
Tsu02g00341 584 Pfam Tetratricopeptide repeat 281 355 - -
Tsu02g00341 584 Gene3D Tetratricopeptide repeat domain 160 268 IPR011990 GO:0005515
Tsu02g00341 584 Pfam MalT-like TPR region 120 269 IPR041617 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00341 Tsu-Chr2 2892385 2895280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00341 121 327 Glycosyltransferase AT3G04240 23.849 6.61e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00341 - - gmx:100815100 987.638
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00341 02 2892385 2895280 Tsu02g00341 02 2892385 2895280 ECH