Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00339 ATGGCGATCTCATCACAATCTTTCTCACCTTCCTTCATCTCAACACCCAACGATTTAACTCGCCCAACTCGTCTTCCTTCCCGAGTCACCTTCACTCACTTCCGCAAAACTCAAACCCGCTATTCACCACTCCGATTCACCGTTTCTTCACGTCTCAACTCATCTAAATCCTCCGATGCCGGCGGTGGTTCACTTTCTCCTGACAACGGCGATGTTCAATACGAGCTTCATCACGATCTTTCACCGCAGCGTCGGAGACGCGGATCGCCAGTGTTTGTTACACTTCCGGTGAAATCTGTTGGGAAAGAGGGGAAAATTTGGAGGCCGAAAGCGATGATGCTGTCGTTGAAAGCTCTTGCTGCTGCTGGTGTGGAAGGTGTTGTTGTGGAGATTTGGTGGGGTGTGGTTGAAAGGAATGAACCTAGGGTTTATGATTGGAGAGGTTATCGTGAACTTGTTATGATGGCTTGCATGTGTGGACTTAAAGTTCGAGCTGTTCTTGCGTTTCATCAACATGGAATTGATGGTGATGATCTTAATGGGATACCACTTCCTCAATGGGTGCTTGATGAGATACATACAGACCCGGATTTAGCATTTTCTGATAGGTTTGGAAGAAGAAATATTGAGTACATTTCCCTCGGGTGTGATATTCTTCCTGTGCTGCGTGGACGTTCTCCCATTCAAGTATATGCAGATTTTATGAGGGACTTCAGGGACACCTTTAGGCCTTATCTGGGCATTATCATTACAGGAGTGCAGATTGGCATGGGACCTGGTGGCGAGTTAAGATATCCTTCATTGTCTTCCCAAAAGCTAAATTTAGCTTTGTCTCGTGAACTTGGAGAGTTTCAGTGCTATGATAAGTACATGCTTGCTTCTCTAAATGCCTCTGCAAGAAATATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGCACTGGAAGTTTGATGCAAAATCCCGAGCGTACTGAATTCTTTAGAAACGAGGGTGGCTCTTGGAATGCGCCATATGGTAAATTTTTCCTTGAATGGTACTCGGATTTGCTACTACGGCATGGAGAGCGACTTTGTAGGGAAGCTGAAACTATATTTAGGGGTACAGAAGTCCACATATCAGCAAAATTGGCAGCCATTCACTGGCACTATGATACACAATCTCATCCATCGGAGTTAACAGCAGGCTATTATAATACTTTTAACAGGGATGGATACTTACCAATTTTACGCATGTTTAGTAAATATGGATTCACGATGTGCTGCTCTTGTTTTGAAATGCAAGATGTAATTATGAAGAAGATCAACCCAGATAGTAGCCCTGAAGGTTTTCTTAGACAACTTTTGCTGTCTGCTAGGCTCTGTGACGTATCTCTTGAAGGTCAAAATTTTTCAACTGATTTGGATGACGACGCATTCACTCAGGTGCTGGAGATGTCAAAATTTTACTCAAATGGGATTGAGAGACGCCCCTTCTCATTCAACTTTGTAAGAatggacaaaaatatgtttgaaCCCCGAAATTGGGACCGGTTTACTCGATTTGTGAGACGAATGTCCGATGGAAACATGCTTCGAGCCAGATTAAATTCTGTTGGAAACCTACGGTTGAAAACTACAGTGGCTGCAGAAGTTGGATTGTTGTACCAGCTATACCAGTACTCTTGA 1668 0.4353 MAISSQSFSPSFISTPNDLTRPTRLPSRVTFTHFRKTQTRYSPLRFTVSSRLNSSKSSDAGGGSLSPDNGDVQYELHHDLSPQRRRRGSPVFVTLPVKSVGKEGKIWRPKAMMLSLKALAAAGVEGVVVEIWWGVVERNEPRVYDWRGYRELVMMACMCGLKVRAVLAFHQHGIDGDDLNGIPLPQWVLDEIHTDPDLAFSDRFGRRNIEYISLGCDILPVLRGRSPIQVYADFMRDFRDTFRPYLGIIITGVQIGMGPGGELRYPSLSSQKLNLALSRELGEFQCYDKYMLASLNASARNIGKREWGNGGPFGTGSLMQNPERTEFFRNEGGSWNAPYGKFFLEWYSDLLLRHGERLCREAETIFRGTEVHISAKLAAIHWHYDTQSHPSELTAGYYNTFNRDGYLPILRMFSKYGFTMCCSCFEMQDVIMKKINPDSSPEGFLRQLLLSARLCDVSLEGQNFSTDLDDDAFTQVLEMSKFYSNGIERRPFSFNFVRMDKNMFEPRNWDRFTRFVRRMSDGNMLRARLNSVGNLRLKTTVAAEVGLLYQLYQYS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00339 555 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g00339 555 Pfam Glycosyl hydrolase family 14 92 515 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 SUPERFAMILY (Trans)glycosidases 88 544 IPR017853 -
Tsu02g00339 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 144 162 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 123 137 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 388 399 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 166 187 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 406 429 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 258 280 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 335 354 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 371 387 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 PANTHER - 30 539 IPR001554 GO:0000272|GO:0016161
Tsu02g00339 555 MobiDBLite consensus disorder prediction 52 74 - -
Tsu02g00339 555 PANTHER BETA-AMYLASE 30 539 - -
Tsu02g00339 555 Gene3D Glycosidases 81 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00339 Tsu-Chr2 2883941 2887649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00339 73 526 Glycoside Hydrolase AT4G17090 48.796 3.85e-153 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00339 K01177 - gmx:100805981 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00339 02 2883941 2887649 Tsu02g00339 02 2883941 2887649 ECH