Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00179 ATGAACATTGGATATTGTTCAATGTCACGCTTCCAATTTCCAATCAGGCTCTTAACAAAACCCCTAATTTCTTCAATGcgttacaataataataagtcTTTTTTATCCGTTCAAAATTCTTCAGCTTCATCCATAACCACCGCCACAGAACCCACAAAATCGAAGCAGAATGAACCAACTTGGTTAATTGTTGGCCTCGGTAATCCTGGCAAAAAATTCTCTGGTACACGCCACAATgTGGGATTTGAGATGGTTGATACTATAGCTGAAGCAGAAGGGATATCTATCAACAGTGTTTCCTTTAAAGCTCTATTTGGAAAAGGTTACATAGGTGATGTACCAGTTATACTTGCAAAGCCACAGACTTTTATGAATTTAAGTGGTGAATCTGTTGGAGCCATAGTTTCATATTACAAGATTCCATTGAAGCAAGTACTTGTGatCTTTGACGACTTGGATTTGCCTTTTGCTAAATTGCGGCTGCTACCAAAGGGTGGACATGGAGGTCAGAATGGAATGAAGAGTATTATTAATCACTTGAAAGGGAATTCTGGTTTTCCTCGCTTAAGAATTGGCATTGGACGACCTCCTGGGAAAATGGATCCTGCGGCATTTGTTCTTCGATCTTTCACTAAACAGGAAAGAGAAGAACTGGATTTTACCTTACACCGTGGATTACAAGCCGTGCGGATTATTTTGTTGGAGGGGTTCGATAAAGGATCGTCTTGCAAGGAGACACAAGTAAACTTAAAAAAGCAGTTCAGGTTCCAGTACAGTGAATTCAAATCTAATGCTTGGAATCTTCTGATATTTGGTTATGCAGAAATACTAGATATGTTTGTTCTCAGAGGTATATTTTATTCTAATCAACATAAAGCAGTATTTGGATGCTTACATGCGGCCCATGCTCAAGATTTTTTGCTAGCTATCCCAATTGACGGATTAGGCCAACATATGTCCCCGGTAGAGTATCGCACTATTCTCAAATATCGCTTGATGATTCCTTTATTTCCTGCTGATGAGCTTTACCCAACATTTGCAAAGAATGTCGTGCGAAGTAGACCATCTTATGACCGTGAATGTCCAGCAGGAAAAGTTCCAATTTACAAGAGGACAAAAGGACAACAAATTGTTACTAATTCGTCTTCAAAATTACCAATTGAAGATTTGCGACATTATGCCCACAGATTCAATGAAGCTCATACTGTTACTCTAGATACAACCCAAAATCAGATATTTTACGGAGGATCTGCATTGATAAGTGGATATGATCTATCACTCAACCTCAACCAATACAGCACATCTTCGGTTATTGTTGAAAGTGGTCCACGAGCAGAACTCAATAGCATACACGCTGGACTTGGGGCATTTGGTAGCGCTCATTCTGGATGTTCTGATACTCAATGTCCTGGTTTCGTCCAAGTAACTAAAGACAAACGGTTTTATCTTGGAGCTGTCGGATCTCCCGGTACTCGTGTTGGAGAACCAAGTAAATTATTCCTTTTAACCAAAATCCAACGGgATCGATCCACAGGAAATTGGTGGTTAATTGTTGATGAAAAACATCAAGTACATGTTGGATATTGGCCAAAAGAAATATTCACTCACTTAAGCACAGGAGCTTCTAAGGTTAGATTTGGCGGTGAAACTTTTGCTGCAGCTATTACAGTAAGTCCCCCAATGGGTAGTGGGAGATTGCCTCAAGACGGATTTCAATATTCAGCTCTCATGGGATTACTTCAGCATATTGATACAAATTATAATGAAATTGATTTATATCCTGCATTTATGAAGGTATATAATGATGCTAAAAAAGAATGCtatgatttaaaattttatgaacaTTTAGGAGGAGATTTGTTTCGACGATCTATTTTGTATGGTGGGCCGGGTGGACAATGTCATTTATGA 1911 0.383 MNIGYCSMSRFQFPIRLLTKPLISSMRYNNNKSFLSVQNSSASSITTATEPTKSKQNEPTWLIVGLGNPGKKFSGTRHNVGFEMVDTIAEAEGISINSVSFKALFGKGYIGDVPVILAKPQTFMNLSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGQNGMKSIINHLKGNSGFPRLRIGIGRPPGKMDPAAFVLRSFTKQEREELDFTLHRGLQAVRIILLEGFDKGSSCKETQVNLKKQFRFQYSEFKSNAWNLLIFGYAEILDMFVLRGIFYSNQHKAVFGCLHAAHAQDFLLAIPIDGLGQHMSPVEYRTILKYRLMIPLFPADELYPTFAKNVVRSRPSYDRECPAGKVPIYKRTKGQQIVTNSSSKLPIEDLRHYAHRFNEAHTVTLDTTQNQIFYGGSALISGYDLSLNLNQYSTSSVIVESGPRAELNSIHAGLGAFGSAHSGCSDTQCPGFVQVTKDKRFYLGAVGSPGTRVGEPSKLFLLTKIQRDRSTGNWWLIVDEKHQVHVGYWPKEIFTHLSTGASKVRFGGETFAAAITVSPPMGSGRLPQDGFQYSALMGLLQHIDTNYNEIDLYPAFMKVYNDAKKECYDLKFYEHLGGDLFRRSILYGGPGGQCHL 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00179 636 SUPERFAMILY Peptidyl-tRNA hydrolase-like 60 239 IPR036416 GO:0004045
Tsu02g00179 636 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 73 86 IPR018171 GO:0004045
Tsu02g00179 636 TIGRFAM pth: aminoacyl-tRNA hydrolase 62 237 IPR001328 GO:0004045
Tsu02g00179 636 Hamap Peptidyl-tRNA hydrolase [pth]. 60 238 IPR001328 GO:0004045
Tsu02g00179 636 Pfam Neprosin 460 630 IPR004314 -
Tsu02g00179 636 PANTHER PEPTIDYL-TRNA HYDROLASE 29 247 IPR001328 GO:0004045
Tsu02g00179 636 Pfam Peptidyl-tRNA hydrolase 62 238 IPR001328 GO:0004045
Tsu02g00179 636 Gene3D - 46 245 IPR036416 GO:0004045
Tsu02g00179 636 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 29 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00179 Tsu-Chr2 1524080 1534167 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00179 K01056 - gmx:100526866 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00179 02 1524080 1534167 Tsu02g00179 02 1524080 1534167 ECH