Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00176 ATGTCTCAAATCTTCGAATACTTCGTTGTGTGTGGGATCGGAGCAGAGATTCGTTCCATCGATGGAACGAAAGGGTACCATGGTCCTGGTTGGATGTATCTTCCTTCTCTTCTGGATCAATATCCACCTTCTACTCACACTCTTTACCCTCCTGCACCTCCTCAGCTTCCAACTTGTGTTCTACCCGCTGGTGTTGTGTTTTATTCTTCAGGATTTGATCCTAATGATCCTTCCACTTTTCCGCGGAGTTATCCAATTGTTTTGACCGAGGGTGATGGTTCAAAAATCTATGTTAGCTGCATTTCTTTCCGGGATCCTGTTTGTGAAGATATTCTGGAGGCCTACAGGATACAGGGAAATTCCTACGCTGACAAATGCATCTGTCTAGTTTCACGCTCGCCAAGTTTCAGTGTGCTAAGGAGTGCCCTAGAGGAACTGTTTGTTCTATGTTTCTCGCCAACTGGAAGTAGCAAGCCACTATGGGACATTATAGCACATATGGTGTCCAATGTACCTTTACCTAATCCTGGAAAGGAGCGAGTTCTGTTTGCTATTGAGAATCGTCTGCTTTCTGTAGAGGCTCCACCAAACTATGGACTTCCCCATGTTGATATATCATTCCAGCCTCTGGTACAGTGTTTAGATGTTGACAACTTAATGAGACTTTTTACAGCAGTGCTGCTTGAGAGGAGGATTTTACTTCGAGCAAACAAATATTCACTTCTAACTCTTGCATCAGAGGCCATTTGTCACCTAATCTACCCATTCCGATGGCAGCATGTATACATTCCATTGCTGTTTTACAGCGGAGTAGATTATATTGATGCTCCTACACCATATATGATGGGACTCCATTCTGGTGTTGATACCACTGGTCTAACAATGGATGGTGTAGTTGTTGTGGACCTTGAGTATAATCGTATCACTACGTCAGAAGAAATTCCACCTATTCCTGAGCCAGAATTCAGCTTTTTGCGTGGTGAGATCACAAAGTTATTACATCCCAATGTAATTGGAATTGATGAAATGAAGACTGGAATATATAGTGTATCTGAGCACTTTCCTAAACTTAGGGCTAAGCAATGGGGAGAAGAACACAACCTTCAGCTAAGGATGATATTCCTAAAGTTCTTTGCAACATTTTTAAGTGGTTACCGCAATTTTCTAGAAAATAGTGCTACTCAGGTCTTCAACACCCAAGCTTTTTTGAAGAAGCGGTCTCGATCTACCAACCAACCGTCAGAGCCCATGATAGCTCAGTTTCTTGAATCCCATGGTTTCTTGGATTATTTGGAGAGAGGGGTAGGTTTTGATGAAAACAACAATACTGTGCTTGATAAGCTGCAAGATGCAATTGGAAGGGGTCAAAACCCTATGTCAGTTTTTCGTTCATCCGCAGTAGAGCCTGATATTTTAACGGTATCAGATTCTGCTGTTGGAATATCAGGGTCTAGTGCCAAATATACTCATGATAGATTTCCGTCAAACATCAGAACTGAAGAGCAAGAAGAAAAGAGGAAACAGATTCTTGCAACCGTTAGTAATGCCTTTGAGTACTCTGGAAGGCATACTCCAAGCAAGGATCCTTTAGCAGACAATCTTACTCCACAAGAGAGAGCTGCTGAAAGGGACCTTATGGTACTGGACATTCAGGTTAAGCTGCAGGGTTTATGGCTGCGGCTTCTTAAATTGGAAACTAAAGATGATCCTCTCTCATCCTTTGAATATGGAACAATACTTGCTTTGATTGAATCTGATGCAGAGGGAATCGGTGGTAGTGGATTTGTTGAATGTATAAGGGAGCATATGAATTCGGGTTGGCACTGTCAGCTCACCGAAGAACAGTTTATTGCAGTGAAAGAGTTGCTCAAAACAGCTATCAATCGTGCAACATCGCGAAGTGACTGGTTGACCATTAGAGATGCTCTTGAAGTTTCTTCTGATATGTATAAGAAAGACAATAATAATGTGCCAGACTATGTCCAACGTCATCTTATTTCTCTATCTATTTGGGAGGAGCTACGGTTTTGGGAAGGATATTTTGACTATTTAATGGAGCAAGCTTCAAATGAGTCAGCCAACTACGCATCTCTGGCGACTGCACAGCTTGTTGTGTTGGCTTCACACATGGCTGGGATAGGACTTCATGACAATGATGCTTGGTACATGATCGAAACAATTGCAGAGAAGAACAATGTCGGATCCAAACAATTtATAAAAATCAGAGGATTCTTATCTCATATCCAACAACTACGTAATGGGTACTGGGGATTCACCTCAATGAAGGCACAGTCTTCCCTATCACTTGCATTGACATCCCCACATTCAAAAAACGCCATAGACGAGGATCAGCAACCAACTGAGGGAACCGGTGTTGGTAGAAGCTGGGTGCATAGTATGTTCAGCCGAAGTACAACAACTAGATCCAGCTCATTTAGTCGTGTTCGTAGATGGACGTCTGATGGAGGCAATTCAGCCACCAATGAGAATGGGACTCCTCGCAAACAAGATTCATCAATTGGGGGGCAGAAGAAGCTTCAAACAAATGTTCGCATGCTTAGGGGTCATAATGGTGCCATTACTGCTCTCCACTGTGTTACAAAGAGAGAAGTGTGGGATTTGGTGGGTGACCGTGAAGATGCTGGGTTCTTTATTAGTGGAAGTACAGACTGCTCGATTAAGATATGGGACCCAAGTCTCCGTGGTTCTGAACTGAGGGCAACTTTAAAAGGGCATACGagGACTGTCCGTGCCATAAGTTCAGACAGGGCGAAAGTGGTGTCAGGTTCTGATGATCAATCTGTTTTGGTTTGGGATAAGCAGACAACTCAACTTTTAGAAGAGCTTAAAGGCCATGACGGACCGgtattctttattttaaaaatatttcgtCTTATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTTTATGCATGGAATATGATGACAATGTGGGAATCTTAGCTGCGGCTGGAAGAGACGTGGATGCCAACATGTGGGACATTCGTGCAAGTAGGCAGATGCATAAACTTTCAGGACATACACAATGGATAAGGTCACTAAGAATGGTCGGTGACACTGTTATTACTGGTAGTGATGATTGGACGGCAAGAATATGGTCTGTTTCACGAGGAACATGTGATGCTGTCCTAGCATGCCATGCAGGACCAATATTATGTGTTGAATATTCTTCTTTAGACAGAGGAATAATAACAGGGTCAACTGATGGCCTGCTGCGGTTTTGGGAAAATGACGATGGAGGTATAAGGTGTGCAAAAAATGTAACAGTTCACAACGCTGCCATATTATCTATCAATGCTGGGGAGCACTGGTTAGGTATTGGAGCAGCTGataattctctctctctttttcatcGGCCCCAAGAGAGACTTGGTAGCTTTTCTGGCACCAGCGGCGGGTCCAAGATGGCTGGTTGGCAGCTTTACAGAACACCACAAAAAACAGTTGCTATGGTAAGATGTATCGCTTCAGACCTGGAAAGGAAAAGGATATGCAGCGGGGGTCGTAATGGGCTTTTAAGACTATGGGATGCAACCATCAATATTTGA 3597 0.4279 MSQIFEYFVVCGIGAEIRSIDGTKGYHGPGWMYLPSLLDQYPPSTHTLYPPAPPQLPTCVLPAGVVFYSSGFDPNDPSTFPRSYPIVLTEGDGSKIYVSCISFRDPVCEDILEAYRIQGNSYADKCICLVSRSPSFSVLRSALEELFVLCFSPTGSSKPLWDIIAHMVSNVPLPNPGKERVLFAIENRLLSVEAPPNYGLPHVDISFQPLVQCLDVDNLMRLFTAVLLERRILLRANKYSLLTLASEAICHLIYPFRWQHVYIPLLFYSGVDYIDAPTPYMMGLHSGVDTTGLTMDGVVVVDLEYNRITTSEEIPPIPEPEFSFLRGEITKLLHPNVIGIDEMKTGIYSVSEHFPKLRAKQWGEEHNLQLRMIFLKFFATFLSGYRNFLENSATQVFNTQAFLKKRSRSTNQPSEPMIAQFLESHGFLDYLERGVGFDENNNTVLDKLQDAIGRGQNPMSVFRSSAVEPDILTVSDSAVGISGSSAKYTHDRFPSNIRTEEQEEKRKQILATVSNAFEYSGRHTPSKDPLADNLTPQERAAERDLMVLDIQVKLQGLWLRLLKLETKDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHMNSGWHCQLTEEQFIAVKELLKTAINRATSRSDWLTIRDALEVSSDMYKKDNNNVPDYVQRHLISLSIWEELRFWEGYFDYLMEQASNESANYASLATAQLVVLASHMAGIGLHDNDAWYMIETIAEKNNVGSKQFIKIRGFLSHIQQLRNGYWGFTSMKAQSSLSLALTSPHSKNAIDEDQQPTEGTGVGRSWVHSMFSRSTTTRSSSFSRVRRWTSDGGNSATNENGTPRKQDSSIGGQKKLQTNVRMLRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSIKIWDPSLRGSELRATLKGHTRTVRAISSDRAKVVSGSDDQSVLVWDKQTTQLLEELKGHDGPVFFILKIFRLMWDVRTDRCVATVGRCSSAVLCMEYDDNVGILAAAGRDVDANMWDIRASRQMHKLSGHTQWIRSLRMVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTVHNAAILSINAGEHWLGIGAADNSLSLFHRPQERLGSFSGTSGGSKMAGWQLYRTPQKTVAMVRCIASDLERKRICSGGRNGLLRLWDATINI 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00176 1198 ProSiteProfiles Tripartite DENN domain profile. 18 442 IPR037516 -
Tsu02g00176 1198 SUPERFAMILY WD40 repeat-like 878 1194 IPR036322 GO:0005515
Tsu02g00176 1198 MobiDBLite consensus disorder prediction 777 796 - -
Tsu02g00176 1198 SMART DENN_cls 122 306 IPR001194 -
Tsu02g00176 1198 ProSitePatterns Trp-Asp (WD) repeats signature. 1180 1194 IPR019775 -
Tsu02g00176 1198 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 939 - -
Tsu02g00176 1198 ProSiteProfiles Trp-Asp (WD) repeats profile. 879 897 IPR001680 GO:0005515
Tsu02g00176 1198 Gene3D - 1 176 - -
Tsu02g00176 1198 SMART WD40_4 971 1010 IPR001680 GO:0005515
Tsu02g00176 1198 SMART WD40_4 1154 1193 IPR001680 GO:0005515
Tsu02g00176 1198 SMART WD40_4 1013 1050 IPR001680 GO:0005515
Tsu02g00176 1198 SMART WD40_4 1053 1092 IPR001680 GO:0005515
Tsu02g00176 1198 SMART WD40_4 846 897 IPR001680 GO:0005515
Tsu02g00176 1198 SMART WD40_4 902 939 IPR001680 GO:0005515
Tsu02g00176 1198 SMART WD40_4 1097 1134 IPR001680 GO:0005515
Tsu02g00176 1198 SMART uDENN_cls 1 104 IPR005113 -
Tsu02g00176 1198 PANTHER C-MYC PROMOTER BINDING PROTEIN 18 1198 - -
Tsu02g00176 1198 MobiDBLite consensus disorder prediction 812 843 - -
Tsu02g00176 1198 Gene3D - 965 1197 IPR015943 GO:0005515
Tsu02g00176 1198 Gene3D - 835 959 IPR015943 GO:0005515
Tsu02g00176 1198 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Tsu02g00176 1198 Pfam uDENN domain 35 103 IPR005113 -
Tsu02g00176 1198 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 18 1198 - -
Tsu02g00176 1198 CDD WD40 849 1193 - -
Tsu02g00176 1198 ProSiteProfiles Trp-Asp (WD) repeats profile. 1020 1059 IPR001680 GO:0005515
Tsu02g00176 1198 ProSiteProfiles Trp-Asp (WD) repeats profile. 1060 1092 IPR001680 GO:0005515
Tsu02g00176 1198 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 948 IPR001680 GO:0005515
Tsu02g00176 1198 Pfam WD domain, G-beta repeat 849 897 IPR001680 GO:0005515
Tsu02g00176 1198 Pfam WD domain, G-beta repeat 907 939 IPR001680 GO:0005515
Tsu02g00176 1198 Pfam WD domain, G-beta repeat 1016 1050 IPR001680 GO:0005515
Tsu02g00176 1198 Pfam WD domain, G-beta repeat 1055 1091 IPR001680 GO:0005515
Tsu02g00176 1198 SMART dDENN_cls 366 434 IPR005112 -
Tsu02g00176 1198 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1060 1092 - -
Tsu02g00176 1198 Gene3D - 202 387 IPR043153 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00176 Tsu-Chr2 1344366 1408113 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00176 844 1091 Acyl Lipid Metabolism Gene Families AT3G18860 25.191 1.44e-10 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00176 - - gmx:100818305 2133.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00176 02 1344366 1408113 Tsu02g00176 02 1344366 1408113 ECH