Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00061 ATGGAGagaaaagatgaaaatggaTCTTCTTTACATTCTCCTTTGCTTCAAATAATATCAGTGCAAAAGGATGATACAGAAGCAGTGGCAGAACAATACAAGAAGAAAAGAGTGGTAGAATCAGAAAGAAGAAAAGATTTCTTTgaagaagtgaagaagcagTTATGGCTGGCAGGGCCATTGACATCTGTGTCTCTTTTAAATTTTGGCATACAGATTATATCTGTAATGTTTGTTGGCCACCTTGGTGAGTTGCCTCTCTCAGGTGCTTCAATGGCTACTTCTTTTACTTCTGTCACTGGCATTAGTGTATTGCTAGGAATGGCAAGTGCGTTGGATACCTTGTGTGGGCAGTCATATGGAGCAAAGCAGCAGCAGATGTTAGGCATACACATGCAGAGGGCCATGCTCAGCCTTATGATTGTCAGCATACCCTTAGCTATTATCTGGGCAAACACCAGTTCCATTCTGATTTTCCTTGGCCAAGATCGTGAAATATCTGAAGAAGCCGGAAAATATGCTCAATTAATGATCCCAAGCCTTTTTGCTTATGGACTACTTCAATGCATAAACAGATTCTTACAAACCCAAAATATTGTATTTCCACTGACCTTCACCTCTGGAGCTGCTACTTTGCTACATCTTATATTATGTTGGATTTTGGTCTTCAAATTTGGACTGGGGAGTAGAGGAGCTGCCATAGCAAATTCTATATCTTACTGTGTGAATGTTTTGATGCTGGTACTCTATGTAAAGTTTTCTCCTTCTTGTGCAAAAACTTGGACAGGATTTTCAAAAGAGGCACTGCATAATATTCCTTCTTTTCTGAGGCTTGCTATTCCTTCAGCTGCTATGGTTTGCTTGGAGATGTGGTCATTTGAAATGGTGGTTCTCCTATCTGGTCTTCTGCCAAATCCTAAGTTGGAAACGTCTGTGTTTTCTATCTGCTTGAATACAGCAGAAACTTTTTGGATGATCTCATTTGGTTTCAGTGGAGCTGTGAGCACTCGAGTATCAAATGAACTAGGCGCTGCTCATCCTTCGGCTGCACGCTTAGCAGTTCATGTTGTCTTAGTACTGGCACTTATTGAAGGCACCTTAGTTGGAACAGTGATGATATTAATCCGTAATATTTGGGCCTATGCGTATAGTAATGAAATAGAAGTGGTCGAATATGTAGCAAAAATGTTGCCAATTCTTGCAGTATCACACTTCCTGGATGGATTACAGTGCGTGCTTTCAgGTGCGGTTAGAGGATGTGGTTGGCAGGAAATTGGTGCCATTATCAATCTAGGCTCTTATTATGCAGTTGGGATTCCATCAGCCATTGTGTTAGCTTTCGTATTATGTATTGGAGGGAAGGGGCTTTGGCTAGGGATGATATGTGCACTTGGTGTACAAGTAGTGTCTCTAGTAATCATCACCTTACGTACTGATTGGGAGCAGGAGGCAAAGAAGGCTATAGATAGAGTCCATGATTCAATGACACTAGAGAGCACAGTATCCTGA 1509 0.4036 MERKDENGSSLHSPLLQIISVQKDDTEAVAEQYKKKRVVESERRKDFFEEVKKQLWLAGPLTSVSLLNFGIQIISVMFVGHLGELPLSGASMATSFTSVTGISVLLGMASALDTLCGQSYGAKQQQMLGIHMQRAMLSLMIVSIPLAIIWANTSSILIFLGQDREISEEAGKYAQLMIPSLFAYGLLQCINRFLQTQNIVFPLTFTSGAATLLHLILCWILVFKFGLGSRGAAIANSISYCVNVLMLVLYVKFSPSCAKTWTGFSKEALHNIPSFLRLAIPSAAMVCLEMWSFEMVVLLSGLLPNPKLETSVFSICLNTAETFWMISFGFSGAVSTRVSNELGAAHPSAARLAVHVVLVLALIEGTLVGTVMILIRNIWAYAYSNEIEVVEYVAKMLPILAVSHFLDGLQCVLSGAVRGCGWQEIGAIINLGSYYAVGIPSAIVLAFVLCIGGKGLWLGMICALGVQVVSLVIITLRTDWEQEAKKAIDRVHDSMTLESTVS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00061 502 TIGRFAM matE: MATE efflux family protein 61 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g00061 502 Pfam MatE 60 220 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g00061 502 Pfam MatE 281 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Tsu02g00061 502 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 490 - -
Tsu02g00061 502 CDD MATE_eukaryotic 50 486 IPR045069 GO:0042910|GO:1990961
Tsu02g00061 502 PANTHER PROTEIN DETOXIFICATION 29 490 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00061 Tsu-Chr2 383676 386559 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00061 K03327 - gmx:100792588 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00061 02 383676 386559 Tsu02g00061 02 383676 386559 ECH