Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00053 ATGGCTGAGGGGCTCGTTCTTCGCGGCACCATGCGTGCTCACACTGATGTCGTTACCGCCATTGCTACCCCAATTGACAACTCCGACATGATTGTCACTGCTTCCCGTGACAAATCCATCATCCTCTGGCACCTTACCAAGGAGGAGAAGACCTACGGTGTTCCCCGCCGCCGTCTCACCGGTCACTCTCACTTTGTCCAGGATGTTGTTCTCTCATCCGACGGTCAGTTCGCTCTTTCCGGTTCATGGGACGGTGAACTCCGTCTCTGGGATCTCAACGCTGGAACCTCCGCTCGCAGATTCGTTGGTCACACCAAAGATGTTCTCTCCGTTGCTTTCTCGATCGACAACCGTCAGATCGTGTCTGCTTCTCGTGACCGCACGATTAAGCTGTGGAACACTCTCGGTGAATGCAAATACACTATCACAGACGGTGATGCTCATTCCGATTGGGTTAGCTGTGTGAGATTCAGTCCTAGCACTCTTCAACCAACAATCGTTTCTGCTTCATGGGATAAAACCGTGAAAGTTTGGAATCTCAcaaattgcaagctgagaaaCACTCTCGCTGGACATTCTGGTTATGTCAACACTGTTGCTGTTTCACCCGATGGTTCTCTTTGTGCTTCTGGTGGCAAAGATGGAACTATTCTTCTTTGGGATTTGGCTGAGGGAAAGAAACTTTATAGTCTTGATGCTGGTTCTATTATTCATGCTTTGTGTTTCAGTCCTAATAGGTACTGGCTATGTGCTGCAACTGAGTCCAGCATCAAGATCTGGGATTTGGAGAGCAAGAGCGTTGTTGACGAGTTGAAGATTGACCTTAAGAATGAAGCTGATGGTCTTGGTGGTGGTACCACAACTACCAAGAAGaagGTTATCTACTGTACTAGCTTGAACTGGAGTGCAGATGGAAGCACCTTGTTCAGTGGATATACCGATGGTGTTGTCAGAGTTTGGGGTATTGGACGTTTTTAG 978 0.4744 MAEGLVLRGTMRAHTDVVTAIATPIDNSDMIVTASRDKSIILWHLTKEEKTYGVPRRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLNAGTSARRFVGHTKDVLSVAFSIDNRQIVSASRDRTIKLWNTLGECKYTITDGDAHSDWVSCVRFSPSTLQPTIVSASWDKTVKVWNLTNCKLRNTLAGHSGYVNTVAVSPDGSLCASGGKDGTILLWDLAEGKKLYSLDAGSIIHALCFSPNRYWLCAATESSIKIWDLESKSVVDELKIDLKNEADGLGGGTTTTKKKVIYCTSLNWSADGSTLFSGYTDGVVRVWGIGRF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00053 325 Gene3D - 4 325 IPR015943 GO:0005515
Tsu02g00053 325 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 101 133 - -
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 11 53 IPR001680 GO:0005515
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 188 IPR001680 GO:0005515
Tsu02g00053 325 CDD WD40 7 320 - -
Tsu02g00053 325 ProSitePatterns Trp-Asp (WD) repeats signature. 166 180 IPR019775 -
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 289 325 - -
Tsu02g00053 325 PANTHER RECEPTOR FOR ACTIVATED PROTEIN KINASE C RACK1 3 325 IPR045223 GO:0015935|GO:0043022
Tsu02g00053 325 PRINTS G protein beta WD-40 repeat signature 120 134 IPR020472 -
Tsu02g00053 325 PRINTS G protein beta WD-40 repeat signature 166 180 IPR020472 -
Tsu02g00053 325 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Tsu02g00053 325 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN 3 325 - -
Tsu02g00053 325 Pfam WD domain, G-beta repeat 55 91 IPR001680 GO:0005515
Tsu02g00053 325 Pfam WD domain, G-beta repeat 9 43 IPR001680 GO:0005515
Tsu02g00053 325 Pfam WD domain, G-beta repeat 137 179 IPR001680 GO:0005515
Tsu02g00053 325 Pfam WD domain, G-beta repeat 227 261 IPR001680 GO:0005515
Tsu02g00053 325 Pfam WD domain, G-beta repeat 297 320 IPR001680 GO:0005515
Tsu02g00053 325 Pfam WD domain, G-beta repeat 99 133 IPR001680 GO:0005515
Tsu02g00053 325 Pfam WD domain, G-beta repeat 187 221 IPR001680 GO:0005515
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 11 45 - -
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 226 - -
Tsu02g00053 325 SMART WD40_4 4 44 IPR001680 GO:0005515
Tsu02g00053 325 SMART WD40_4 52 91 IPR001680 GO:0005515
Tsu02g00053 325 SMART WD40_4 286 321 IPR001680 GO:0005515
Tsu02g00053 325 SMART WD40_4 182 221 IPR001680 GO:0005515
Tsu02g00053 325 SMART WD40_4 94 133 IPR001680 GO:0005515
Tsu02g00053 325 SMART WD40_4 135 179 IPR001680 GO:0005515
Tsu02g00053 325 SMART WD40_4 224 261 IPR001680 GO:0005515
Tsu02g00053 325 ProSitePatterns Trp-Asp (WD) repeats signature. 78 92 IPR019775 -
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 95 - -
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 297 325 IPR001680 GO:0005515
Tsu02g00053 325 SUPERFAMILY WD40 repeat-like 7 322 IPR036322 GO:0005515
Tsu02g00053 325 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 133 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g00053 Tsu-Chr2 332689 335249 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g00053 140 322 Miscellaneous Gene Families AT5G08390 26.486 1.57e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00053 K14753 - gmx:100778205 622.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00053 02 332689 335249 Tsu02g00053 02 332689 335249 ECH