Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g00017 ATGCCAATTCCCACCGccaacttattattattatttatccCCCTTCTCACTATCTCCTTCCTCACCCTCTCCGTCGCCGCACGCCCCTATGTTCTTGTCCTCTCCCAGGAAGACTTCAAAGACGATGTCCCTCCCGATTCCGATTCCTCCGCCGAGTGGGACGAGTTCGGCGACTCTGATTCCCACAAATCCGAAGAGGATCTTGACCCTGGTTCATGGCGCCAAATCTTTGAACCCTCCCCCACAGACCCCCAACCACAATCCGATACGGAGCTTCTCTACTACTCCTCCGTCTCCAAGCTAATGACTGGGGACTCCCGTCTAATGGAAGAGGGCTCCGGTGAGATCGAGGCGGCTGCAGAATCTGGCTACCCTGCCGCTCAATcagttttagggtttttgtggGGAATGGGGCTTTTGCGTGAGAGGAGCAAACAGAAAGCATTTGTTTACCATCACTTTGCTTCTGAGGGTGGCAATATGCAATCCAAAATGGCTCTCGCTTATCTCTACACTCGTCAAGATATGTTTGATAAATCGGTTAAGCTTTATGCTGAGTTGGCTGAAGTTGCTGTAAATAGTTTTCTTATTTCCAAAGATTCTCCGGTCATTGAACCTGTTAGGCTACACAATGGAGCTGAAGAGAACAAAGAGGCACTCAGAAAGTCTAAAGGGGAAGAGGACGATGACTTTCAGATTCTCGAATATCAGGCACAGAAAGGGAATGCAGCTGCAATGTACAAAGTCGGTCTCTTTTACTACTTCGGTCTTCGTGGACTGAGGCGTGACCATTCCAAGGCACTCTCTTGGTTCTTGAAGGCAGTGGAGAAGGGTGAGCCTCGTTCTATGGAACTTCTTGGAGAGATATATGCCAGGGGAGCTGGTGTTGAGAGAAACTACACGAAAGCCTTTGAATGGCTTACTCTTGCATCTAAACACCACCTCTACTCTGCTTATAATGGGATCGGTTATTTGTATGTCAAAGGCTACGGAGTCGACAGCAAGAATTACACTAAAGCAAAAGAGTATTTTGAAAAGGCTGCTGATAATGACGAGGTTGGTGGCCATTATAACCTAGGTGTCATGTATCTCAAGGGAATTGGAGTCAAAAGAGATGTGAAGTTAGCATGTAAGTTCTTTATAGTGGCTGCCAATCACGGCCAACCGAAGGCTTTCTACCAGCTTGCAAAGATTTTTCATCTTGGTGTTGGGTTCAAGAAGAATGTTCCATTGGCTACTGCCCTATACAAGTTAGTTGCAGAACGAGGTCCATGGAGTTCTTTGTCCAGATGGGCACTAGAAGCATACTTAAAAGGTGATGTTGGCAAGGCATATATGTTGTATTCAAGAATGGCTGAGATGGGCTATGAGGTGGCACAGAGTAATGCTGCTTGGATTCTTGACAAATATGGAGAACGAAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAGCGAGCACATTCTTTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTAATTGGAGATGCATATTACTATGGTCGGGGAACTGCCAGGGATTACGACCGAGCTGCGGAGGCTTACATGCATGCCAAATCACAATCTAATGCACAAGCTATGTTCAATCTCGGATACATGCATGAGCATGGCCAAGGACTTCCCCTTGACCTTCATCTAGCCAAACGTTACTATGATGAAGCTCTAGAGCATGATCCGGCAGCTAAGTTGCCGGTCACATTGGCTCTTACAAGCTTGTGGGTTCGGAAGAACCACGCTGACAGTTTATTGgtcCACATAATTGATTCGTTGCCAGATGTCTATCCAAAATTGGAAGCTTGGGTAGAGAATGTGCTTTTGGAGGAGGGAAATGCCACGATTCTAACCCTCTTTGCATGCCTCCTAACTGTGCTGTATCTACGCGAGAGGCAACGGAGGCAAGCTGTTGCTGTAGCTGGAGAGGTCGCTCAGCCAAATCGCCCTAATGAACTTGGTGTGGCTGCACCCATGTAA 2022 0.4639 MPIPTANLLLLFIPLLTISFLTLSVAARPYVLVLSQEDFKDDVPPDSDSSAEWDEFGDSDSHKSEEDLDPGSWRQIFEPSPTDPQPQSDTELLYYSSVSKLMTGDSRLMEEGSGEIEAAAESGYPAAQSVLGFLWGMGLLRERSKQKAFVYHHFASEGGNMQSKMALAYLYTRQDMFDKSVKLYAELAEVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDDDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASKHHLYSAYNGIGYLYVKGYGVDSKNYTKAKEYFEKAADNDEVGGHYNLGVMYLKGIGVKRDVKLACKFFIVAANHGQPKAFYQLAKIFHLGVGFKKNVPLATALYKLVAERGPWSSLSRWALEAYLKGDVGKAYMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYDRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPLDLHLAKRYYDEALEHDPAAKLPVTLALTSLWVRKNHADSLLVHIIDSLPDVYPKLEAWVENVLLEEGNATILTLFACLLTVLYLRERQRRQAVAVAGEVAQPNRPNELGVAAPM 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g00017 673 MobiDBLite consensus disorder prediction 39 89 - -
Tsu02g00017 673 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 9 655 - -
Tsu02g00017 673 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 9 655 IPR044623 GO:0030433
Tsu02g00017 673 SUPERFAMILY HCP-like 335 464 - -
Tsu02g00017 673 SUPERFAMILY HCP-like 436 577 - -
Tsu02g00017 673 Gene3D Tetratricopeptide repeat domain 115 203 IPR011990 GO:0005515
Tsu02g00017 673 Gene3D Tetratricopeptide repeat domain 218 597 IPR011990 GO:0005515
Tsu02g00017 673 SMART sel1 125 160 IPR006597 -
Tsu02g00017 673 SMART sel1 353 388 IPR006597 -
Tsu02g00017 673 SMART sel1 243 279 IPR006597 -
Tsu02g00017 673 SMART sel1 541 576 IPR006597 -
Tsu02g00017 673 SMART sel1 280 315 IPR006597 -
Tsu02g00017 673 SMART sel1 505 540 IPR006597 -
Tsu02g00017 673 SMART sel1 389 424 IPR006597 -
Tsu02g00017 673 SMART sel1 316 352 IPR006597 -
Tsu02g00017 673 MobiDBLite consensus disorder prediction 55 72 - -
Tsu02g00017 673 Pfam Sel1 repeat 281 313 IPR006597 -
Tsu02g00017 673 Pfam Sel1 repeat 541 575 IPR006597 -
Tsu02g00017 673 Pfam Sel1 repeat 507 529 IPR006597 -
Tsu02g00017 673 Pfam Sel1 repeat 317 351 IPR006597 -
Tsu02g00017 673 Pfam Sel1 repeat 125 160 IPR006597 -
Tsu02g00017 673 Pfam Sel1 repeat 356 387 IPR006597 -
Tsu02g00017 673 Pfam Sel1 repeat 438 456 IPR006597 -
Tsu02g00017 673 Pfam Sel1 repeat 243 278 IPR006597 -
Tsu02g00017 673 SUPERFAMILY HCP-like 224 333 - -
Tsu02g00017 673 SUPERFAMILY HCP-like 117 190 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g00017 K14026 - gmx:100787823 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00017 02 112521 117486 Tsu02g00017 02 112521 117486 ECH