Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g05000 ATGGATATGGATGCGATCAATCCATCAATCATCGTCTTCATCACACATACAAACAAAGGACCCCACTCTCACatcacacaacacaacacaacacaacacaacccTCTTCGCTGCGTGCTCCCAATCACTCTCATTCCACACCTCTCTCTCCCTCACTGGCTTCCAAGGATGAACAAGCGACCAAGGAACACCGTCTACAAGCCCCTTCGCGATCTCTCCAATCGAGAGCTCGGCGAATTACCCGCCAGAGTTTTCCCTAACCGTCTCGCCGCCTCCGAGGATCTTGTGCTTCGACTTGATGTATTCAGAAAGCTGGAAAAGCACAGAGGTTGTGTGAACACTGTATGCTTCAATGCAGATGGTGACATTCTCGTTTCGGGTTCTGATGACAGGAGGATTATTCTCTGGGATTGGCAAACTGGTCGTAGTAAACTCTCTTTCCATTCTGGTCATAGTAACAATGTTTTTCAGGCCAAGTTTATGCCTCACTGTGATGATCGAAGCATCATCACTTGCGCTGCTGATGGCCAGgtGAGACATGCTCAAATTCTTGAAAATGAAGGAGTGGAAACTAAGTTGTTGGGCAGTCATCAAGGACGGGCTCATAAGTTGGCTATTGAGCCTGGTAGCCCTCATATATTTTATACCTGCGGCGAAGATGGATTAGTACAGCATTTTGATCTGAGAACTGAGACTGCAACAGAACTTTTTACCTGCACGCCACTTAAGGATAGATGGAATTACATGCCAGTCATCCATCTTAATACAATTGCAATTGATCCAAGGAACCCAAATCTCTTTGCGGTTGCTGGGTCTGACGAATATACGCGGCTCTTTGATATCCGCAAGTATAAATGGGATGCATCAACTGATTTTGGTCAACCGATCGACTACTTTTGCCCTCCGCACTTGATTGGAGATGAGCGAGTAGGAATAACAGGCCTGGCCTTTTCCGAACAAAGGGAGCTTCTTGTGTCATACAATGATGAACTTATTTACCTTTTTACACAAGATATGGGTTTGGGACTGGATCCTGTTCCTGGGTCCCCTATATCTGTTGATAGTGATACAAGTGAGACGGGAGGTAGTCATGGATCTGTGCAATCTCCATCAAAGATGGATGCTGATGAGAAAATCACCCCTCAAGTATTTAAGGGACACAGGAATTGCGAGACAGTGAAGGGTGTTGGTTTTTTTGGGCCTAATTGTGAGTATGTGGTGAGTGGATCAGACTGTGGTCGGATTTTCACATGGAAGAAGAAAGGTGGTCAGCTTATTCGTGTCATGGAAGCAGACAAGCATGTTGTGAACTGTATTGAGTCTCATCCTCATACAACGGTGCTTGCAAGCAGCGGTATTGAGCATGACATCAAGATATGGACTCCAAAGGCCCTCGAGAAAGCTACTTTGCCCAAAAATATTGAGCAGAAACCCAAGGCTAGGGGCTGGATGTACCAGATAGATTCTCCGGAAGACTTGATGTTGCAACTGTTTTCACTTCCAAGACGGAGGGTTAGGACAGAAACCAATGCAGAACGTTCAACTGGAACTGCAGATCGAGAACTTTTAGAGTTGATACTGACATTCAATACTATTAGTGATGATTCtactgatgatgatgatggtgatgatgatggagATGCAACCAACCAAGATGACTTGTTTAGTTGA 1671 0.4351 MDMDAINPSIIVFITHTNKGPHSHITQHNTTQHNPLRCVLPITLIPHLSLPHWLPRMNKRPRNTVYKPLRDLSNRELGELPARVFPNRLAASEDLVLRLDVFRKLEKHRGCVNTVCFNADGDILVSGSDDRRIILWDWQTGRSKLSFHSGHSNNVFQAKFMPHCDDRSIITCAADGQVRHAQILENEGVETKLLGSHQGRAHKLAIEPGSPHIFYTCGEDGLVQHFDLRTETATELFTCTPLKDRWNYMPVIHLNTIAIDPRNPNLFAVAGSDEYTRLFDIRKYKWDASTDFGQPIDYFCPPHLIGDERVGITGLAFSEQRELLVSYNDELIYLFTQDMGLGLDPVPGSPISVDSDTSETGGSHGSVQSPSKMDADEKITPQVFKGHRNCETVKGVGFFGPNCEYVVSGSDCGRIFTWKKKGGQLIRVMEADKHVVNCIESHPHTTVLASSGIEHDIKIWTPKALEKATLPKNIEQKPKARGWMYQIDSPEDLMLQLFSLPRRRVRTETNAERSTGTADRELLELILTFNTISDDSTDDDDGDDDGDATNQDDLFS 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g05000 556 Pfam WD domain, G-beta repeat 103 137 IPR001680 GO:0005515
Tsu01g05000 556 Pfam WD domain, G-beta repeat 424 460 IPR001680 GO:0005515
Tsu01g05000 556 MobiDBLite consensus disorder prediction 534 550 - -
Tsu01g05000 556 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 105 142 - -
Tsu01g05000 556 SMART WD40_4 98 137 IPR001680 GO:0005515
Tsu01g05000 556 SMART WD40_4 297 336 IPR001680 GO:0005515
Tsu01g05000 556 SMART WD40_4 140 182 IPR001680 GO:0005515
Tsu01g05000 556 SMART WD40_4 232 280 IPR001680 GO:0005515
Tsu01g05000 556 SMART WD40_4 377 419 IPR001680 GO:0005515
Tsu01g05000 556 SMART WD40_4 187 227 IPR001680 GO:0005515
Tsu01g05000 556 SMART WD40_4 422 461 IPR001680 GO:0005515
Tsu01g05000 556 MobiDBLite consensus disorder prediction 346 374 - -
Tsu01g05000 556 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 52 530 IPR045151 -
Tsu01g05000 556 MobiDBLite consensus disorder prediction 532 556 - -
Tsu01g05000 556 Gene3D - 93 463 IPR015943 GO:0005515
Tsu01g05000 556 SUPERFAMILY WD40 repeat-like 97 460 IPR036322 GO:0005515
Tsu01g05000 556 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 52 530 - -
Tsu01g05000 556 MobiDBLite consensus disorder prediction 351 374 - -
Tsu01g05000 556 ProSiteProfiles Trp-Asp (WD) repeats profile. 105 146 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g05000 Tsu-Chr1 56763332 56768390 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g05000 K11804 - gmx:100791300 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g05000 01 56763332 56768390 Tsu01g05000 01 56763332 56768390 ECH