Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04998 ATGGAGGGATTAACAGGACTTGCTCATCTATTTGTGACAATGTTTCTAGCAGGTGTTGGAGGTGTTATAGCTATTCCTTCAATAACAGATGTTACCATGTCTGCACTTTGTCCTGGTCAAGATGAATGCTCTCTTGCCATTTACCTCACTGGTTTTCAACATGCTATGATTGGGGTGGGTTCAGTGGTGACGACACCGTTAATTGGGAATTTGTCTGACCGTTACGGTAGGAAAGTCTTGATCACACTTCCTCTCACTGTGTCTCTCATTCCTCAAGCCATATTAGCATATAGCAGGGAAACAAAATTCTTCTATGCATACTATTTGGTGAAAACTCTTGCTGCCCTTGCAGGCGAAGGCAGCTTCCATTGCCTAGCTCTTGCATATGTGGCAGACAAAGTTCCAGTTGGAAAACGAGCATCAGCGTTCGGAATACTTGCTGGTGTTGGATCAGCATCATTTGTTGGCGGAACATTAGCTGCTAGATTCTTATCCACAGCTTTGACATTTCAGGTTGCTTCAGTGTTCTCAATGATGGCATTGGTGTACATGAGAATTTTCCTTAAGGAAAGTGAACCTATGAGGCAGCCATTGTTGAAAGAGGCAGATGAACCATGCATTCAACAGTGTGAGGATGATATGCCTCAAAGAACATTTAAGAAACTACCTTCAATGGGGGATGTAATTTGTTTGCTCAAGTGTAGCCGTACATTCTCACAAGCAGCAATTGTTTTGCTCTTCAATAGTATTGCTGATGGTGGCTTGATGGCTATTTTGCTGTATTATTTGAAGGCGCGTTTTCAATACAACAAAAATCAGTTTGCCGATTTGATGATGATTTCTGGGATTGGAGCTACTCTGACACAACTATTTCTCATGCCCATATTAGTACCTGCTGTAGGAGAGGAGAAGTTGCTCACAACAGGTCTCTTTGTTTCCTGCATAAATATCCTTGTGTACAGTATATCGTGGTCAGCATggGTTCCTTATGCTCTAGCAGGTTTCTCAGTTTTAGGAGTTCTAGTGCGCCCAACTATAACCAGCATTGCATCCAAACAAGTTGGACCTAACGAACAGGGAATGGTTCAAGGATGTCTCTCAGGAGTCACTTCTGTCGCCAACATAATTTCTCCGCTAATTTTCAGTCCACTGACAGCCTTATTCCTGTCAGAAAATGCACCATTTAATTTTCCTGGATTCAGCCTAATGTGCCTTGGGCTTATACTGATGACAGCATTTTTCCTTAGTCTAATGATTCGTGCTCCTCCTCCTATTGTGGGTGACAAAGTTAGTAATAACCGCTGCACAGAAACCTTGGTCTGA 1323 0.4248 MEGLTGLAHLFVTMFLAGVGGVIAIPSITDVTMSALCPGQDECSLAIYLTGFQHAMIGVGSVVTTPLIGNLSDRYGRKVLITLPLTVSLIPQAILAYSRETKFFYAYYLVKTLAALAGEGSFHCLALAYVADKVPVGKRASAFGILAGVGSASFVGGTLAARFLSTALTFQVASVFSMMALVYMRIFLKESEPMRQPLLKEADEPCIQQCEDDMPQRTFKKLPSMGDVICLLKCSRTFSQAAIVLLFNSIADGGLMAILLYYLKARFQYNKNQFADLMMISGIGATLTQLFLMPILVPAVGEEKLLTTGLFVSCINILVYSISWSAWVPYALAGFSVLGVLVRPTITSIASKQVGPNEQGMVQGCLSGVTSVANIISPLIFSPLTALFLSENAPFNFPGFSLMCLGLILMTAFFLSLMIRAPPPIVGDKVSNNRCTETLV 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04998 440 Gene3D MFS general substrate transporter like domains 6 417 IPR036259 -
Tsu01g04998 440 PRINTS Tetracycline resistance protein signature 362 385 IPR001958 GO:0022857
Tsu01g04998 440 PRINTS Tetracycline resistance protein signature 143 165 IPR001958 GO:0022857
Tsu01g04998 440 PRINTS Tetracycline resistance protein signature 50 69 IPR001958 GO:0022857
Tsu01g04998 440 CDD MFS_SLC46_TetA_like 10 418 - -
Tsu01g04998 440 PANTHER MAJOR FACILITATOR SUPERFAMILY PROTEIN 6 428 - -
Tsu01g04998 440 SUPERFAMILY MFS general substrate transporter 43 420 IPR036259 -
Tsu01g04998 440 Pfam Major Facilitator Superfamily 10 378 IPR011701 GO:0022857|GO:0055085
Tsu01g04998 440 ProSiteProfiles Major facilitator superfamily (MFS) profile. 13 424 IPR020846 GO:0022857
Tsu01g04998 440 PANTHER MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10 6 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04998 Tsu-Chr1 56752870 56759429 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04998 2 439 Organic Solute Cotransporters AT2G16990 43.612 1.71e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04998 - - gmx:100805770 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04998 01 56752870 56759429 Tsu01g04998 01 56752870 56759429 ECH