Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04993 ATGGCGGCGACGGCGACGACACCATCATGGCAACCACAAGAACAAGGGTTCAAAGAGATCTGCGCTCTATTAGAGCAACAGATTTCTCATTCTTCTTCCGCTGATAAGTCTCAGATTTGGAACCAAATTCAACAATACTCCAATCTTCCTGACTTCAACAATTACCTCGTCTTCATCTTCACTCGTGCTCAGGGAATATCTGTGGAGGTTCGGCAGGCTGCAGGTTTATATCTGAAGAATAACATGAAAAACGTATATAATTTAATGCAGCCTGAGTACCAGCAATACGTGAAATCAGAGTTGCTGCCTTGTCTTGGTgcagcagataaacacataaggtCTACGACGGGAACTATTATCAGTGTTGTTGTTCAAACCGGAGGAATTTCACGGTGGCCCGAATTATTGCAAGCCCTTGTAACTTGCTTGGATAGCACTGATCTAAATCACATGGAAGGTGCGATGGATGCATTATCCAAGATTTGTGAAGATGTTCCCCAAATTCTTGACTCTGATGTACCAGGGTTAGCAGAGCGTCCCATCAATATATTTCTTCCCAGATTATTTCGGTTTTTCCAATCACCCCACGCTACATTAAGAAAGCTATCACTGGGTTCTGTTAATCAATACATTATGTTGATGCCTTCTGCCTTGTATTTATCCATGGATCAATATCTTCAAGGTCTGTTTATTCTTGCAAATGACCCTACTGCAGAAGTGCGGAAGTTGGTTTGTGCAGCATTTGTTCAGCTGATTGAAGTCCGTCCATCTGTCTTGGAGCCACATCTAAGGAATGTGATTGAATATATGTTACAAGTCAACAAGGACCCAGATGAAGAAGTGGCCCTTGAATCCTGTGAATTTTGGTCTGCATATTGTGATGCTCAAATGCCACCAGAGAACTTGAGAGAATTTTTGCCTCGTCTTATTCCAATATTGTTGTCAAACATGGCTTATGCAGATGATGATGAATCACTTATTGAAGCTGAGgAAGAGGGTTCTCAACCTGATCGAGATCAGGATCTTAAACCTCGATTTCATGTATCAAGGTTTCATGGATCAGATGAAGTAGAAGATGATGATGACGATGTTGTTAATACATGGAATTTACGGAAATGTAGTGCAGCTGCTCTAGATATTCTCTCGAACGTGTTTGGAGATGAGATCCTTCCCACTCTGATGCCTATTGTTGAGGCCAAGTTGTCAACTGTCGGAGATGATGGCTGGAAAGAAAGGGAAGCTGCTGTCCTGGCACTTGGTGCCATAGGCGAGGGTTGCATCAATGGTCTTTATCCTCATCTGCCAGAGATTGTGGCATTTCTTATCCCTCTTCTTGATGATAAGTTTCCTCTGATACGAAGTATTTCATGCTGGACAGTATCTCGGTTTAGCAAATTTATTATTCAGGGTATCGGGCATGCCAAGGGTTATGAACAATTTGATAACGTTCTTATGGGTCTTCTCCGAAGAATTTTGGATGATAATAAGCGTGTACAAGAGGCTGCTTGTTCAGCTTTTGCAACTCTTGAAGAGGAGGCTGCTGAAGAGCTGTCACCACGCTTGGAAATCATATTAAAGCATCTGATGGTTGCATTTGGGAAATATCAGAGGCGAAATCTCAGAATTGTATATGATGCTGTTGGAACTCTAGCTGAAGCTGTTGGGGGAGAGCTGAATCAGCCTGTTTATCTTGACATTCTCATGCCACCATTAATTGAGAAGTGGCAGCAACTTTCAAATTCAGACAAAGATCTCTTTCCACTCCTAGAATGCTTCACATCTATAGCACATGCACTGGGTACTGGATTCACTCCATTTGCTGAACCTGTATTTAGGAGGTGCATAAATATAATTCAGACCCAACAATTGGCTAAGGCCAATCCTGCTGCGGCTGGGGCTCAGTACGACAAGGAATTCATTGTATGCTCTCTTGATCTACTTTCTGGACTAGCAGAAGGTCTTGGCAGTGGAGTAGAGAGTTTGGTTTCACAATGTTCTTTAAGGGACCTACTTTTGCATTGTTGTACGGATGATGCTCCCGATGTTCGACAAAGTGCCTTTGCCTTACTTGGAGACCTTGCTCGAGTATGTGTGGTTCATTTGCACCCTCGTTTGTCTGAGATTCTTGAACTTGCTGCTAAACAACTGGAAATTTCTAAGGTACATGCGGCTATTTCAGTTGCAAATAATGCATGCTGGGCGATTGGAGAATTAGCAGTTAAGGTTCGTCAAGAAATTTCTCCATTCGTATTAAGTGTAATTTCATGCTTGGTACCAATTCTTCAGCATGCAGAGGGACTCAACAAGTCGCTTATAGAAAATAGTGCAATAACACTGGGGAGGCTTGCATGGGTCTGTCCAGACCTTGTATCACCACATATGGAGCATTTCATGCAACCTTGGTGCACTGCTCTTTCAATGATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGGGGTCTATGTGCCATGGTCAAAGCCAATCCTTCCGGAGCTCTAAGTTCGCTTGTTTACATGTGTAAAGCCATTGCAAGTTGGCATGAAATAAGGAGTGAAGATTTACACAATGAAGTCTGCCAGGTCTTGCATGGATATAAACAGATGCTGCGCAATGGAGCATGGGACCAGTGCATGTCTGCTTTGGAGCCACCAATAAAAGAAAagctttcaaaatatcaagtatAA 2685 0.4209 MAATATTPSWQPQEQGFKEICALLEQQISHSSSADKSQIWNQIQQYSNLPDFNNYLVFIFTRAQGISVEVRQAAGLYLKNNMKNVYNLMQPEYQQYVKSELLPCLGAADKHIRSTTGTIISVVVQTGGISRWPELLQALVTCLDSTDLNHMEGAMDALSKICEDVPQILDSDVPGLAERPINIFLPRLFRFFQSPHATLRKLSLGSVNQYIMLMPSALYLSMDQYLQGLFILANDPTAEVRKLVCAAFVQLIEVRPSVLEPHLRNVIEYMLQVNKDPDEEVALESCEFWSAYCDAQMPPENLREFLPRLIPILLSNMAYADDDESLIEAEEEGSQPDRDQDLKPRFHVSRFHGSDEVEDDDDDVVNTWNLRKCSAAALDILSNVFGDEILPTLMPIVEAKLSTVGDDGWKEREAAVLALGAIGEGCINGLYPHLPEIVAFLIPLLDDKFPLIRSISCWTVSRFSKFIIQGIGHAKGYEQFDNVLMGLLRRILDDNKRVQEAACSAFATLEEEAAEELSPRLEIILKHLMVAFGKYQRRNLRIVYDAVGTLAEAVGGELNQPVYLDILMPPLIEKWQQLSNSDKDLFPLLECFTSIAHALGTGFTPFAEPVFRRCINIIQTQQLAKANPAAAGAQYDKEFIVCSLDLLSGLAEGLGSGVESLVSQCSLRDLLLHCCTDDAPDVRQSAFALLGDLARVCVVHLHPRLSEILELAAKQLEISKVHAAISVANNACWAIGELAVKVRQEISPFVLSVISCLVPILQHAEGLNKSLIENSAITLGRLAWVCPDLVSPHMEHFMQPWCTALSMIRDDVEKEDAFRGLCAMVKANPSGALSSLVYMCKAIASWHEIRSEDLHNEVCQVLHGYKQMLRNGAWDQCMSALEPPIKEKLSKYQV 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04993 894 PANTHER TRANSPORTIN 1 ISOFORM 1 10 892 - -
Tsu01g04993 894 SUPERFAMILY ARM repeat 10 884 IPR016024 -
Tsu01g04993 894 ProSiteProfiles Importin-beta N-terminal domain profile. 39 107 IPR001494 GO:0006886|GO:0031267
Tsu01g04993 894 Pfam HEAT-like repeat 409 462 - -
Tsu01g04993 894 SMART IBN_N_2 39 107 IPR001494 GO:0006886|GO:0031267
Tsu01g04993 894 Pfam HEAT repeat 669 697 IPR000357 GO:0005515
Tsu01g04993 894 Gene3D - 7 894 IPR011989 -
Tsu01g04993 894 PANTHER IMPORTIN BETA 10 892 IPR040122 GO:0006606
Tsu01g04993 894 Pfam Importin-beta N-terminal domain 40 106 IPR001494 GO:0006886|GO:0031267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04993 K18752 - gmx:100792702 1629.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04993 01 56718316 56731085 Tsu01g04993 01 56718316 56731085 ECH