Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04982 ATGGAATTtgatgaatatgaatatttagAGAAAACAGTTGATAATTCTGAACTTAAGAATGACAACAAAATTACTAATGGTGGCGGGGATAGGACTGTTAAATCTGAAGATAGAGTCCGTAGTCGTAGCTCCAAGCGTAGggatgatgttgttgatgatgatgttgataaCCGTTTAAAGCATTCCAAGTCTGGTGATGGTTATCGTAGTGGTTATGATAGGCGGAAAGAAAGAGGTTTGTCTCATAATCGTTCACGGTCTAGAGATGGAGACACATTGCAGGATAAGCAGAGAAGCTATCAGGGTAATGGGGACAGGAGGAGAGATAGGGATAGAGACAATGGAGACAAGTATAGAAGGGAGAGAGACAGAGACCGGGACGTTGAAAGAGACAGAAGGAATCGGGGGAGTGAgaatgaaagagaaagagataAAGAGCGTTCTCAGCGAAGCAGAAGTAGATCCGAAAGGCGTCCAAGTGATTTTGATAATGGTGACAGAGAGATAAGTCATGATAGGGAATATAGAGACAGAGAAAGAAACCAAGATAAGGATTATAGAGACAGAGGAACGGCAAGGAACGCAAAGGAACCGGATAGAGAAAACAGACGGcataaagagaaaaaggaagaagcAGCAGAACCTGATATTGATCCTGAAAGAGATCAAAGAACTGTGTTTGCATATCAGATTTCTCTTAAAGCGGATGAGAGAGAGGTTTATGAGTTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAAGGTGTTGGGTATATTGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCAGGTCAACCTCTTCTTGGCCAACCAGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACAGCATCTGTTGCTGGTGGACCTAATGGAAATTTAGGCCCTTATTCCGGGGGTGCAAGAAGGCTCTATGTTGGCAATCTGCATTCCAGTATTACTGAAGCTGATCTCCGTAGGGTGTTTGAAGCATTTGGTCAAGTTGAGCTAGTCCAGCTGCCTCTTGATGACATTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCTCGCCTTGAAGATGCAAAAAATGCTCAGAGCTTGAATAGCCAATTGGAGATTGGTGGCAAGCCAATCAAGGTATCTGCGGTTACCGATCAATCTGGAATGCAAGAATTCGGTGGAAATGCTGGTGatatggatgatgatgaaggtgGTGGCTTGTCCTTGAATGCCTCTTCCCGAGCATTACTCATGCAGAAGTTGGATCGCAGTGGCAATGCATCAAGTATGATTGGTTTGCTGGGCAATTATGCTGTCAACAATACAGGCCTTAATCTACAAGCAACGGGAAACATACCAGCAGCAGCACTTCTGGGAGCTGCACCTGGTGGAGGTCTCCAAATTCCAGTGACAAGTCCTTCTATTGATACAATCGGCATTCCAAGTGAATGCTTATTGTTAAAGAACATGTTTGATCCCGAAAATGAGAAGGAACCGGACTTTGAGTTGGATGTTAGAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGGAACTTAAGACATTTATGTATTGATAAGAAGAGTGCTGGATTTGTCTACTTACGATTTGAAAATACCGAATCTGCAATAAGTGCACAGCGGGCTTTACATGGAAGATGGTTTGCTGGGAAGATGATCACTGCAAGCTTTGTGGTTCCCcagtcatatgaagaaagattTCCTATTCCTGGGTTCCCTTGTCAATTTTACCGTTCCGCTTTTGCGGTGTTATTTGTTGGTACAAATTTTGTAAATGCTAGCGACAACGATGTAATTCATCTTCTGGCAGTTACATTGAAGTTTTGGTGTATCATATCATCATTGGTTCGTACTACGTGGCTTAAATTATGCATGAAACTGGTAGAGATTGTTTCTGATGGAAAAAGTGTAAtggaaacaacaaaaataattgaagatGTTGTGATTGTTGGAGGTGGAATTGCTGGCCTTTCTACAGCCTTAGGACTTCACAGGTTGGGTGTAAGAAGTTTGGTATTGGAATGTTCAGATAGTTTGAGAATGACTGGATTTGGTCTAGCAATATGGGAAAATGCTTGGAAGGCTTTGGATGCTGTTGGTGTTGGAGATATACTTAGACACaaacatatacatcttcatgGGTACATATTTTCAACTTTCtctttttacctttttaattatcaaaaaaaTGAACTATGTTGTGTTAGAAGAAAATTATTGTTGGAAGCACTTGCCAATGAACTTCCAAGTGGTACTATTAGGTACTTGTCTAAGGTTGTTGCTATTGAAGAATCTGGCTTCTCTAAGGTAGTTCATCTTGCCGATGGAACAACCATAAAAACCAAGGTATTGATAGGGTGTGATGGAGTGAACTCCGTGGTGGCAAAATGGTTAGGCTTTAAAGAAGCCACTTATACAGGGAGATATGCAATCCGAGGCTGCGCAGAGTTGGAAAGCAATCACAATTTTGAGCCTCTGCTTATGCATTTCTTTGGCAAAGGTTTTAGAGCTGGAGCTGTTCCATGTGATGAAAAAACTGTTCACTGGTTTTTTACTTGGACTCCTACGATCCAAGATAAAGAGCTAATAGAGAACCCTGCTAAACTAAAACAATATGTGTTAAACAAGCTAGAGAAGATGCCAAGTGATGTTAGATATTTCATAGAAAAAACTGAATTAGATGCATTTCAATCAACTCCATTGAGATATAGACATCCTTGGGAGCTTATAATGGGAAATATTAGTAAAGGCAATGTTTGTGTTGTTGGAGATGCTTTACACCCTATGACACCTGATCTTGGTCAAGGGGGGTGTTGTGCTTTAGAGGATGGGGTGGTTTTAGCAAGATGTCTAGCTGAGGCTTTTTCCAAAAAAccaatggaagaagaagaacaataCAAAACAATTGAGGAAGCATTgaaaaaatatgcaaatgaaAGAAGATGGAGATGCATTGATCTTATTACTACATCTTCTATTGTTGGTTTTATTCAACAAGGTGATTCAAAATTGGTTACCTTTTTAAGGGACAAAACTTTAGGTCCACTATTAGCTGGTCAGTTATTGAAGAAGACTAGTTTTAATTGTGATATTGTGATTGTTGGAGCTGGAATTGCTGGTCTCACAACATCCTTAGGACTTCACAGATTGGGCTTTAGAAGTTTGGTATTAGAATCTTGTGAGAGTTTAAGAGTGAGTGGATTTGCTTTAACAATATGGGAAAATGCTTGGAAGGCTTTAGATGCTGTTGGTGTTGGAGACATCCTTCGACACAAACATATACAACTTCATGGGATTGTCACTACTTCTTTGGTCACGGGACAACAAACATCAACTCTATCTTTCAAGGACAACAAAAGAAACTATGGGGCACGTGAAGTTCGTTGTGTTAGAAGGAAGTTATTGTTGGAAGCTCTTGCCAATGAACTTCCAAATGGTACCATTAGGTACATGTCAAAAGTTGTTGCTATTGAGGAATTTGGCTTCTTTAAGATACTACATCTTGCTGATGGAACAACTATCAAAACTAAGGTATTGATTGGGTGTGATGGAGTGAACTCTGTGGTGGCAAAGTGGTTAAACTTCAAGGAGGCCTCTTACACAGGAAGATATGCAACCAGGGGTTATGCTGAGTTGAAGAACCCTCACCAAATTGAGGCAATGTTTATGCAGTACTTTGGCAAAGGTTTTAGAGCTGGAGCTATTCCATGTAATGAGAAGGGTGTTTATTGGTTTTTCACATGGACTCCTATCAACCAAGATAAAGAGCTAGCACAAGACCCTGCTAAACTAAAAGAGTATGTGTTAAGCAAACTAGAGAATATGCCAAGTGATGTTAAATCTTTCGTAGAAAAAACTGAATTAGATGCATTTCAATCAACTCCATTGAGATATAGACATCCTTGGGAGCTCATGATGGGAAATATTAGTAAAGACAATGTTTGTGTTGCTGGAGATGCTTTACACCCTATGACACCTGATCTTGGCCAAGGGGGGTGTTGTGCTTTAGAGGATGGGGTGGTTTTAGCAAGGTGCCTAGGAGAAGCCTTTTCCAAGAAaccaaatgaaataaaagaagAATACAAAAGGATTGAGGAAAGTTTGAAGAAATATGCAAAGGAGAGAAGATGGAGATGCATTGATCTCATAACTATAGCTTATATTGTGGGGTTTATTCAACAAAGTGGTTCAAAATTTGTTAACTTCATTAGGGATACCATTTTGCCTACATTCCTAGCTGTTCAGCTGTTGAAGAAATCAGATTTTGATTGTGGTCAACTAAAACAGCTCTAA 4371 0.3846 MEFDEYEYLEKTVDNSELKNDNKITNGGGDRTVKSEDRVRSRSSKRRDDVVDDDVDNRLKHSKSGDGYRSGYDRRKERGLSHNRSRSRDGDTLQDKQRSYQGNGDRRRDRDRDNGDKYRRERDRDRDVERDRRNRGSENERERDKERSQRSRSRSERRPSDFDNGDREISHDREYRDRERNQDKDYRDRGTARNAKEPDRENRRHKEKKEEAAEPDIDPERDQRTVFAYQISLKADEREVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTASVAGGPNGNLGPYSGGARRLYVGNLHSSITEADLRRVFEAFGQVELVQLPLDDIGHCKGFGFVQFARLEDAKNAQSLNSQLEIGGKPIKVSAVTDQSGMQEFGGNAGDMDDDEGGGLSLNASSRALLMQKLDRSGNASSMIGLLGNYAVNNTGLNLQATGNIPAAALLGAAPGGGLQIPVTSPSIDTIGIPSECLLLKNMFDPENEKEPDFELDVREDVEAECSKFGNLRHLCIDKKSAGFVYLRFENTESAISAQRALHGRWFAGKMITASFVVPQSYEERFPIPGFPCQFYRSAFAVLFVGTNFVNASDNDVIHLLAVTLKFWCIISSLVRTTWLKLCMKLVEIVSDGKSVMETTKIIEDVVIVGGGIAGLSTALGLHRLGVRSLVLECSDSLRMTGFGLAIWENAWKALDAVGVGDILRHKHIHLHGYIFSTFSFYLFNYQKNELCCVRRKLLLEALANELPSGTIRYLSKVVAIEESGFSKVVHLADGTTIKTKVLIGCDGVNSVVAKWLGFKEATYTGRYAIRGCAELESNHNFEPLLMHFFGKGFRAGAVPCDEKTVHWFFTWTPTIQDKELIENPAKLKQYVLNKLEKMPSDVRYFIEKTELDAFQSTPLRYRHPWELIMGNISKGNVCVVGDALHPMTPDLGQGGCCALEDGVVLARCLAEAFSKKPMEEEEQYKTIEEALKKYANERRWRCIDLITTSSIVGFIQQGDSKLVTFLRDKTLGPLLAGQLLKKTSFNCDIVIVGAGIAGLTTSLGLHRLGFRSLVLESCESLRVSGFALTIWENAWKALDAVGVGDILRHKHIQLHGIVTTSLVTGQQTSTLSFKDNKRNYGAREVRCVRRKLLLEALANELPNGTIRYMSKVVAIEEFGFFKILHLADGTTIKTKVLIGCDGVNSVVAKWLNFKEASYTGRYATRGYAELKNPHQIEAMFMQYFGKGFRAGAIPCNEKGVYWFFTWTPINQDKELAQDPAKLKEYVLSKLENMPSDVKSFVEKTELDAFQSTPLRYRHPWELMMGNISKDNVCVAGDALHPMTPDLGQGGCCALEDGVVLARCLGEAFSKKPNEIKEEYKRIEESLKKYAKERRWRCIDLITIAYIVGFIQQSGSKFVNFIRDTILPTFLAVQLLKKSDFDCGQLKQL 1456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04982 1456 MobiDBLite consensus disorder prediction 18 220 - -
Tsu01g04982 1456 Gene3D - 323 431 IPR012677 -
Tsu01g04982 1456 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 806 821 - -
Tsu01g04982 1456 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 957 973 - -
Tsu01g04982 1456 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 672 694 - -
Tsu01g04982 1456 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 942 957 - -
Tsu01g04982 1456 SMART rrm2_1 329 401 IPR003954 GO:0003676
Tsu01g04982 1456 SMART rrm2_1 504 582 IPR003954 GO:0003676
Tsu01g04982 1456 Gene3D - 498 596 IPR012677 -
Tsu01g04982 1456 SUPERFAMILY FAD/NAD(P)-binding domain 1055 1443 IPR036188 -
Tsu01g04982 1456 CDD RRM3_RBM39_like 502 584 - -
Tsu01g04982 1456 CDD RRM1_RBM39_like 225 297 - -
Tsu01g04982 1456 Gene3D - 161 311 IPR012677 -
Tsu01g04982 1456 MobiDBLite consensus disorder prediction 30 220 - -
Tsu01g04982 1456 SUPERFAMILY RNA-binding domain, RBD 220 326 IPR035979 GO:0003676
Tsu01g04982 1456 Pfam FAD binding domain 672 982 IPR002938 GO:0071949
Tsu01g04982 1456 Pfam FAD binding domain 1055 1388 IPR002938 GO:0071949
Tsu01g04982 1456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 301 IPR000504 GO:0003723
Tsu01g04982 1456 PANTHER MONOOXYGENASE 2-RELATED 1056 1455 - -
Tsu01g04982 1456 Gene3D - 672 1038 IPR036188 -
Tsu01g04982 1456 Gene3D - 1056 1428 IPR036188 -
Tsu01g04982 1456 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 1056 1455 IPR044560 -
Tsu01g04982 1456 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 419 521 IPR029123 -
Tsu01g04982 1456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 405 IPR000504 GO:0003723
Tsu01g04982 1456 TIGRFAM SF-CC1: splicing factor, CC1-like family 105 592 IPR006509 GO:0003723|GO:0005634|GO:0006397
Tsu01g04982 1456 SUPERFAMILY FAD/NAD(P)-binding domain 672 1043 IPR036188 -
Tsu01g04982 1456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 503 586 IPR000504 GO:0003723
Tsu01g04982 1456 PANTHER FAD/NAD(P)-BINDING OXIDOREDUCTASE FAMILY PROTEIN 669 1055 IPR044560 -
Tsu01g04982 1456 PANTHER MONOOXYGENASE 2-RELATED 669 1055 - -
Tsu01g04982 1456 SMART rrm1_1 504 582 IPR000504 GO:0003723
Tsu01g04982 1456 SMART rrm1_1 225 297 IPR000504 GO:0003723
Tsu01g04982 1456 SMART rrm1_1 329 401 IPR000504 GO:0003723
Tsu01g04982 1456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 293 IPR000504 GO:0003723
Tsu01g04982 1456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 330 399 IPR000504 GO:0003723
Tsu01g04982 1456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 527 579 IPR000504 GO:0003723
Tsu01g04982 1456 SUPERFAMILY RNA-binding domain, RBD 328 590 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04982 Tsu-Chr1 56627364 56651031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04982 1056 1455 Miscellaneous Gene Families AT5G05320 52.593 1.39e-141 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04982 K13091 - mtr:MTR_1g112780 1275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04982 01 56627364 56651031 Tsu01g04982 01 56627364 56651031 ECH