Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04980 ATGATTGGGATTGTGACAGAAGTTAACGGTGATTCAGATTTGGATTCAGATAGCGAAGTAtctgatgatgaggatgatagTGAGGATGAGGATGGTGATGTTGAGGAAGGTGATGAAAGTAATAATGGTGGTAGAAATTCTGATAGGAAGGATGCTTCTTTGCATGGTAAAACCGCTGCTCTTCAGACTAACGAGCTACGTGTACTCTGGATGGATGAATCTGAATCCACACAGAATTTCAGTGACGTTGAGGTTATTGATCGTGGATTTTTACATGGTGATTTTGTAGCTGCTGCCTCTGATCCTACTGGGCAAGTGGGTGTTGTGGTTGATGCCAATATGTCTGTGGATTTGTTGGCCCATGATGGGTCTATTGTAAAAGAGGTCTCATCAAAAGCCTTAAAGCGTATTAGGGATTTCACTGTTGGTGATTATGTGGTGCTCGGGTCTTGGTTAGGAAGAATTGATGATGTTTTGGATAATGTGACTGTCTTATTTGATGATGGTTCAGTTTGTAAAGTCTCCAAAGCAGATCCAATGAATCTTAAACCAATTTCAAAGAATATTCTTGAAGATGGGCATTTCCCTTATTACCCAGGGCAACGTGTAAGGGCCAAGTCTTCATCAATCTTCAAGATGGCTAGGTGGTTGTCTGGCCTGTGGAAAGCAAATAGGTTAGAAGGTACTGTCACCAATGTTACAGTTGGATCAGTGTTCGTTTATTGGATAGCATCTGCAGGTTATGGGCCATACTCTTCTACTTCCCCGGCTGAGGAACAGAGTCCGAAAAACTTAAAATTGTTGTCTTGTTTTGCTCATGCAAACTGGCAATTGGGTGACTGGTGTCTTTTACCCTCATCTGCACTGTCATCTTCTGTTTCCATCAACAAGAGCAAATCAAAATTGGAACGTAACAATTCTGTTAATATTGAATTAGATTCTAATCAAACAGGGAGTGGGTGTGATTCAGAAGACGCTACAATTGAGGAATCAAATGGGAATAAGGATGCTATGGACCTTGATCCAGTGGGTGCTTTGGAAGGGAATGATGGAACTGATAGAAATAATCCTTCACGCGAGTCTAGCTCATGTGATAGTTCTATCTCAGTATCAAAGGATCCTGTCCATGAAGCTTGGCCTCTTCATCGCAAGAAAATAAGGAAAGTTGTCATCAGGAAAGAAAAGAGAGCTCGGAAGAAAGAGGAAAACTTTGAAAGAGCTCTTCTAATTTCCAACACTAGGACAAGAGTTGATGTTGCTTGGCAGGATGGAACAATAGAGCGTGAACTAGATTCTACGAACTTAATTCCTATTGAGAATCCTGGTGATCATGAATTTGTTTCAGAACAATATGTTGTCGAGAAGATTTCTGATGTTGGTGAGGATAATTGCGAAACTAGCCGAGTTGGGGTGGTGAGGAGTGTTAATGCCAAAGAGCGGACAGCTTGTGTGAGGTGGATAAAACCAGCTGCCAGGGCAGATGATCCCCGAGAATTTGACAAGGAGGAAATTGTAAGTGTCTATGAGCTAGAGGGCCATCCAGATTATGATTACTGCTACGGGGACGTGGTTGTTAGACTATCACCTGTGACTGTCTGTTCAGAAGCTTCTGTTGGAGAGTCCACTGAGAAATCGAAGCAGGAAAATGAAGAAAGCGGACTTAAAATGGAAGCAGGAACTGAAACAGAAAATGCATCTGCTGGCGAAACGGATGTGGAGTTCTCAGACCTCTCTTGGGTTGGAAATATAACTGGTCTTAAGAATGGTGACATTGAAGTTACTTGGGCTGATGGGATGGTATCAACGGTTGGGCCCCAAGCAATCTATGTGGTTGgtagagatgatgatgatgaatcagTTGCTGCAGGGAGCGATATAAGTGATGCTGCAAGCTGGGAAACCGTTAATGATGATGAAATGGAAGTCCTAGAGGATTCCAAAGAGGATGTTAATAGGGAAAATTCAAGCGATGTTACTTCTGAAGCAGAAGACAATGGAGAGAAAGACTTTGGTAGGACCACAGCACTTTCTGTCCCGCTAGCAGCCCTTCGATTCGTCACCAGACTTGCCTCTGGAATATTCTCCAGGGGACAAAAGAACTTAGATCCTGCTGACACAGAGTCAAATGATGAATATTCTCCATCACCGGTTAATGTTTGTGAGTCCAGTTCTCAGGAATGTATTGCCATTGATGGTGACAATTCAAGCAGCAAGAGTTTTAAAAATGAGGAAGTTATTATTCCAGAAAGATCTGAAAATGTGGAAGTAGCTGAGACACTGTGCAGCTTGAAGAATGAAGATGCTCCTGCAAGTTGCGACAATGATGCTTGCAGTTTGAAACATTTTGACATGGTTACAGATCCGTCGGACCATTATTATATTGGTGCAAATGGACAGAGAAACAACCGAAAATGGTTTAAGAAGGTGCAACAAGATTGGGGCATACTACAAAATAACCTTCCTGAGGAAATCTTTGTACGGGTCTATGAAGATAGAATGGATCTTGTGAGGGCAGTTATTGTAGGGCCATTCGGGACTCCTTACCAAGATGGGctgtttttctttgattttcacCTTCCGCCAGAGTATCCTGATGTTCCACCGTCAGCGTACTATCATTCAGGCGGTTGGCGTATTAACCCTAATTTGTATGAGGAAGGGAAGGTTTGCCTTAGCCTTCTAAATACATGGACAGGCAGAGGAAATGAAGTATGGGATCCGAAATCATCTAGCATCCTTCAAGTTCTAGTTTCACTACAAGGGCTAGTACTCAACTCCAAGCCTTACTTTAATGAAGCTGGATATGATAAGCAGACTGGAACAGCTGAAGGAGAGAAAAATTCATTGTCATACAATGAGAATACATTTTTACTTAACTGCAAGACCATGATGTATCTTATGCGGAAGCCCCCCAAGGATTTCGAAGTGCTCATCAAAGAACACTTTAAGAGACGTGGTCATTACATCCTTAAGGCTTGTGATGCATATATGAAAGGTTACTTGATTGGCTCATTGAACAGAGATGCCTCCCGAAGTAAATACATCACTACCTTAAGAATTGAAGGAGCTTGA 3072 0.4144 MIGIVTEVNGDSDLDSDSEVSDDEDDSEDEDGDVEEGDESNNGGRNSDRKDASLHGKTAALQTNELRVLWMDESESTQNFSDVEVIDRGFLHGDFVAAASDPTGQVGVVVDANMSVDLLAHDGSIVKEVSSKALKRIRDFTVGDYVVLGSWLGRIDDVLDNVTVLFDDGSVCKVSKADPMNLKPISKNILEDGHFPYYPGQRVRAKSSSIFKMARWLSGLWKANRLEGTVTNVTVGSVFVYWIASAGYGPYSSTSPAEEQSPKNLKLLSCFAHANWQLGDWCLLPSSALSSSVSINKSKSKLERNNSVNIELDSNQTGSGCDSEDATIEESNGNKDAMDLDPVGALEGNDGTDRNNPSRESSSCDSSISVSKDPVHEAWPLHRKKIRKVVIRKEKRARKKEENFERALLISNTRTRVDVAWQDGTIERELDSTNLIPIENPGDHEFVSEQYVVEKISDVGEDNCETSRVGVVRSVNAKERTACVRWIKPAARADDPREFDKEEIVSVYELEGHPDYDYCYGDVVVRLSPVTVCSEASVGESTEKSKQENEESGLKMEAGTETENASAGETDVEFSDLSWVGNITGLKNGDIEVTWADGMVSTVGPQAIYVVGRDDDDESVAAGSDISDAASWETVNDDEMEVLEDSKEDVNRENSSDVTSEAEDNGEKDFGRTTALSVPLAALRFVTRLASGIFSRGQKNLDPADTESNDEYSPSPVNVCESSSQECIAIDGDNSSSKSFKNEEVIIPERSENVEVAETLCSLKNEDAPASCDNDACSLKHFDMVTDPSDHYYIGANGQRNNRKWFKKVQQDWGILQNNLPEEIFVRVYEDRMDLVRAVIVGPFGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQTGTAEGEKNSLSYNENTFLLNCKTMMYLMRKPPKDFEVLIKEHFKRRGHYILKACDAYMKGYLIGSLNRDASRSKYITTLRIEGA 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 697 719 - -
Tsu01g04980 1023 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 1 1012 - -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 38 55 - -
Tsu01g04980 1023 SMART ubc_7 807 964 - -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 351 370 - -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 536 571 - -
Tsu01g04980 1023 SUPERFAMILY UBC-like 786 971 IPR016135 -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 541 557 - -
Tsu01g04980 1023 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 804 964 IPR000608 -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 1 55 - -
Tsu01g04980 1023 Gene3D Ubiquitin Conjugating Enzyme 773 1019 IPR016135 -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 306 327 - -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 643 670 - -
Tsu01g04980 1023 Pfam Ubiquitin-conjugating enzyme 812 952 IPR000608 -
Tsu01g04980 1023 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 1 1012 - -
Tsu01g04980 1023 CDD UBCc 807 957 IPR000608 -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 645 670 - -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 306 370 - -
Tsu01g04980 1023 MobiDBLite consensus disorder prediction 12 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04980 Tsu-Chr1 56609435 56614805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04980 86 288 Miscellaneous Gene Families AT2G33770 42.157 7.14e-49 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04980 K10581 - gmx:100799332 1587.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04980 01 56609435 56614805 Tsu01g04980 01 56609435 56614805 ECH