Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04959 ATGTTTCTCACAAGGACTGAATATGATCGAGGAGTCAATACCTTTTCTCCTGAAGGCcgtttgtttcaggttgaataTGCAATCGAAGCCATCAAGCTGGGATCAACCGCGATTGGTTTGAAGACGAAAGAAGGTGTTGTTCTTGCTGTTGAAAAACGTATCACTTCGCCTCTACTGGAGCCTAGCAGTGTGGAGAAAATAATGGAAATTGATGACCACATTGGCTGTGCAATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCATAGGTTTTCATATGGTGAACCAATGACTGTTGAATCCACAACTCAAGCTCTTTGTGACCTAGCCTTGCGCTTTGGTGAAGGCGATGAAGAATCCATGTCTCGACCATTTGGAGTGTCTCTCCTCATTGCTGGCCATGACGAGAATGGACCTAGCCTATATTACACTGATCCTTCTGGAACATTCTGGCAATGCAACGCAAAAGCTATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATTCAACAAGGACTTGACTCTTCAAGAAGCTGAGACTATTGCTTTATCTATTCTGAAGCAAGTTATGGAAGAAAAgGTCACTCCCAACAACGTTGACATTGCCAGGGTTGCTCCAGCATATCATCTTTATACCCCTTCTGAGGTGGAAGCTGTGATAGGACGCCTATGA 714 0.4314 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPAYHLYTPSEVEAVIGRL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04959 237 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 233 IPR029055 -
Tsu01g04959 237 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 237 - -
Tsu01g04959 237 ProSitePatterns Proteasome alpha-type subunits signature. 8 30 IPR000426 GO:0006511|GO:0019773
Tsu01g04959 237 Pfam Proteasome subunit A N-terminal signature 8 30 IPR000426 GO:0006511|GO:0019773
Tsu01g04959 237 SMART Proteasome_A_N_2 8 30 IPR000426 GO:0006511|GO:0019773
Tsu01g04959 237 CDD proteasome_alpha_type_5 8 218 IPR033812 GO:0019773|GO:0043161
Tsu01g04959 237 Pfam Proteasome subunit 31 216 IPR001353 GO:0005839|GO:0051603
Tsu01g04959 237 ProSiteProfiles Proteasome alpha-type subunit profile. 23 234 IPR023332 -
Tsu01g04959 237 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 237 - -
Tsu01g04959 237 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 237 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04959 Tsu-Chr1 56453506 56457994 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04959 K02729 - gmx:100499756 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04959 01 56453506 56457994 Tsu01g04959 01 56453506 56457994 ECH