Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04853 ATGAACCAAAAACAAcccttcttctttctcttctcttctcccCTCATTTATTCATACATCACCCTCTTCTATTTCCTCACCAGAACCACTCTATGCTTAGTAGAACCAAAATTTGAAGCCTGTGAACCCAAAACATGTGGCAACAACCAAACTATAAGATACCCTTTCTACATCAAAGGAATACAACAACCTTTTTGTGGCTACCCTGGTTTTGGTATCTCTTGTGACACTAATCTTGGTTTTCCAATCCTTAATCTTTCTAATACGTTATACAAAATCGACgaaattttctatcaaaatCAATCATTAAGAGTTTCCAATGCTGTTTTTTCAAGATCAAACATCAACAAAGGTTGTCTTTCACCTAGCCACAACCTCAGTTTCCCTATGATCATGTACAAGCTTGCACATAACCAAACCCGAGTAATTTTGTTCTTTGGATGCGACTCAACAAAGCTACCCAAAGAGTTGCAAAAGAACAGAATTGGTTGCTCTGCAGAAAACGAAACGACTTCGGTTGTGGCATTGTATGGAGATGATAAAAATGCAAGCTTTGTGTCAAAGAATTGCAAGGGTGGGGTAGTGAATGCGATGGTGGAAAATGTTGTGAAAGGAGGGATTGAAGAGTCGCTGAGAAATGGGTTTCGGTTGAATTGGATAGCTACTGATTGTAGTGAGTGTTATAACAGTGGAGGAAGGTGTGGTTTtaattcatctatatatagtttCAGATGTTACTGCACTGATAGAGTTCATGCTGCAAGATGTGATCCagGTTTGGGCATTGGAATCACAGGCATCTTTTTGATTGGTTCGCTGTGTCTCTTTCTACTCTACAAACGAAAACATGCTATCTCGGTTGGACACTTCCAATCTAGTTACTCTTTTTCCGATTCCTCCATAAATCCACGCCGAGAAATGGGTAGTAAATACTTTGGAGTTCCACTATTCTCCTACGACGAGCTTAGAAAAGCAACAAACAATTTTGACCATAATAAAGAACTTGGAGATGGAGGCTTTGGCACTGTCTACTTAGGGAAACTTCCCGATGGACGTGAAGTTGCTGTCAAGCGTTTATACGAACACAACTATAGGAGAGTAGAACAGTTCATGAATGAAGTTAATATCCTGACAACTTTAAGGCACAAAAATCTCGTGTCCCTCTATGGCTGCACATCACGGCACAGCCGTGAACTACTGCTTGTGTATGAATATATCTCAAATGGCACCATTGCATGTCATCTCCATGGGGAATTGGCCAAGCCCGGCTTACTACCATGGTCTATACGAATTAAAATTGCTATAGAAACTGCTACGGCCTTGGCTTATCTCCACGCTTCTGGTATCATTCACCGTGACGTGAAAACGAGCAACGTACTCCTTGATGACAATTTTTGTGTTAAAGTTGCAGATTTTGGCCTTTCAAGACTCTTCCCTGAAGATGCTACTCATGTCTCCACAGCTCCACAAGGGACACCAGGTTACCTTGACCCCGAGTATCACCAATTTTATCAGCTTACTAGCAAGAGTGATGTATATAGTTTTGGAGTTGTGCTCATTGAGCTAATATCATCTAAGCCTGCTGTTGATATAAACAGAAGTAGGGAAGAGATTAACTTGTCAACTCTAGCCACAAGGAAGATTCAAGAAAGTGCAATTGATGAACTGGTAGATCCTTGTCTTGGTTTTGATTCAGACAACGAGGTTAATAGGATGATTGTTTCAGTAGCAGAATTGGCTTTTCAATGTTTGCAAAGGGATAAGGAGTTGAGACCTACTATGGAAGAAGTCTTAGATGAACTTAGGAGAATAGAGAGTGGTAAGGACATGGTTGAGGTTGTAGAAGAGGCAGATGTTGATGATGTTGGATCTTCACACAGTAATGTAAATCCACCACCAATGCAAGCCTCACCTGAATGGGATGAAGTTGGATTGTtgaagaatatgaaaaatatgaagCATCCTTCTTCACCAAACACTGTCACTGATAAATGGGAAAGTATAAGTACTACGCCTAATGCCAGTGCCTAA 2031 0.3919 MNQKQPFFFLFSSPLIYSYITLFYFLTRTTLCLVEPKFEACEPKTCGNNQTIRYPFYIKGIQQPFCGYPGFGISCDTNLGFPILNLSNTLYKIDEIFYQNQSLRVSNAVFSRSNINKGCLSPSHNLSFPMIMYKLAHNQTRVILFFGCDSTKLPKELQKNRIGCSAENETTSVVALYGDDKNASFVSKNCKGGVVNAMVENVVKGGIEESLRNGFRLNWIATDCSECYNSGGRCGFNSSIYSFRCYCTDRVHAARCDPGLGIGITGIFLIGSLCLFLLYKRKHAISVGHFQSSYSFSDSSINPRREMGSKYFGVPLFSYDELRKATNNFDHNKELGDGGFGTVYLGKLPDGREVAVKRLYEHNYRRVEQFMNEVNILTTLRHKNLVSLYGCTSRHSRELLLVYEYISNGTIACHLHGELAKPGLLPWSIRIKIAIETATALAYLHASGIIHRDVKTSNVLLDDNFCVKVADFGLSRLFPEDATHVSTAPQGTPGYLDPEYHQFYQLTSKSDVYSFGVVLIELISSKPAVDINRSREEINLSTLATRKIQESAIDELVDPCLGFDSDNEVNRMIVSVAELAFQCLQRDKELRPTMEEVLDELRRIESGKDMVEVVEEADVDDVGSSHSNVNPPPMQASPEWDEVGLLKNMKNMKHPSSPNTVTDKWESISTTPNASA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04853 676 CDD STKc_IRAK 335 604 - -
Tsu01g04853 676 ProSitePatterns Protein kinases ATP-binding region signature. 335 357 IPR017441 GO:0005524
Tsu01g04853 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Tsu01g04853 676 Pfam Wall-associated receptor kinase galacturonan-binding 41 106 IPR025287 GO:0030247
Tsu01g04853 676 SUPERFAMILY Protein kinase-like (PK-like) 306 601 IPR011009 -
Tsu01g04853 676 ProSiteProfiles Protein kinase domain profile. 329 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04853 676 MobiDBLite consensus disorder prediction 652 676 - -
Tsu01g04853 676 SMART serkin_6 329 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04853 676 Pfam Wall-associated receptor kinase C-terminal 178 249 IPR032872 -
Tsu01g04853 676 Gene3D Phosphorylase Kinase; domain 1 301 405 - -
Tsu01g04853 676 Pfam Protein kinase domain 330 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g04853 676 Gene3D Transferase(Phosphotransferase) domain 1 406 618 - -
Tsu01g04853 676 MobiDBLite consensus disorder prediction 619 676 - -
Tsu01g04853 676 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 26 675 - -
Tsu01g04853 676 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 26 675 IPR044652 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04853 Tsu-Chr1 55564637 55573006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04853 37 676 Receptor kinase-like Gene Family AT1G25390 45.820 4.39e-165 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu01g04853 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04853 - - aprc:113872417 929.472