Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04784 ATGGCCATTCCCTGCCCCCATTTCATCTCCTCCGCAAAAGCCGCCATGGAAGCCGGTCTTCTCATACCTTCCTCACCTTCTTCATCCGTTTCCGTTATCCTCACCCAAGACGATTTGAAGAAAATCGCCGCATACAAAGCCGTTGAATACGTCGAATCCGGCATGGTTCTCGGCCTCGGAACCGGTTCAACGGCGAAACATGCTGTCGACCGAATCGGTGAGCTTCTCCGTCAAGGAAAGCTGAAAAACATCATTGGTATACCCACTTCAACAAAAACCCATGAACAAGCTGTTTCGTTAGGGATTCCTCTTTCGGATCTAGATTCTCACCCTGTTGTTGATCTTGCTATTGATGGTGCTGATGAAGTTGATCCTTATCTGAATTTGGTCAAAGGACGTGGTGGGTcacttttgagagaaaaaatggtGGAAGGTGCTTGTAAGAAATTTGTTTGTATTGTTGATGAATCAAAATTGGTTAATTATATAGGTGGTAGCGGTTTAGCTATGCCTGTTGAAGTTATTAGGTTTTGTTGGAAATTTACTGCTGGTAGGCTTCAGAATCTGTTTGATGAATCTGGTTGTGTTGCAAAGCTTAGAACTTTTGGTGAAAAGAAAGAACCTTATGTTACTGATAATGGGAATTATATTGTTGATTTGTATTTTCAGAAAAGTATTGGTGATTTGAAGGTTGCAAGTGATGCAATTCTGAATATTGCTGGTGTTGTTGAGCATGGAATGTTTTTGGATATGGCTACTACTGTTATTGTTGCAGGTGAACTCGGGTTAACGGTGAAGAATAAGTAG 807 0.4089 MAIPCPHFISSAKAAMEAGLLIPSSPSSSVSVILTQDDLKKIAAYKAVEYVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNIIGIPTSTKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEVDPYLNLVKGRGGSLLREKMVEGACKKFVCIVDESKLVNYIGGSGLAMPVEVIRFCWKFTAGRLQNLFDESGCVAKLRTFGEKKEPYVTDNGNYIVDLYFQKSIGDLKVASDAILNIAGVVEHGMFLDMATTVIVAGELGLTVKNK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04784 268 Gene3D - 162 246 - -
Tsu01g04784 268 SUPERFAMILY D-ribose-5-phosphate isomerase (RpiA), lid domain 168 249 - -
Tsu01g04784 268 Hamap Ribose-5-phosphate isomerase A [rpiA]. 36 266 IPR020672 GO:0004751|GO:0009052
Tsu01g04784 268 Pfam Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 86 260 IPR004788 GO:0004751|GO:0009052
Tsu01g04784 268 CDD RPI_A 39 259 IPR004788 GO:0004751|GO:0009052
Tsu01g04784 268 SUPERFAMILY NagB/RpiA/CoA transferase-like 35 219 IPR037171 -
Tsu01g04784 268 PANTHER RIBOSE-5-PHOSPHATE ISOMERASE 3, CHLOROPLASTIC-RELATED 1 268 - -
Tsu01g04784 268 TIGRFAM rpiA: ribose 5-phosphate isomerase A 39 262 IPR004788 GO:0004751|GO:0009052
Tsu01g04784 268 Gene3D - 39 260 - -
Tsu01g04784 268 PANTHER ISOMERASE, PUTATIVE-RELATED 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04784 Tsu-Chr1 54940642 54944159 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04784 K01807 - gmx:100795150 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04784 01 54940642 54944159 Tsu01g04784 01 54940642 54944159 ECH