Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04721 ATGGCCGTCGATATCCTAACCTTAGAAAACAGGTATATTGATTCTTGCAGGAGACATGGTGTTTTGCCTAACGCTGCTATTTTGTCAAGCTTTTTCAAGGCTGAGGTCAAAAAATCCCACCAAGAGCCATGCATCCTGGACATTTTAATTGACGACCTTAAGGATATTGATTTTGCTCCACTCTTTGAGATATGCTCAAATCTTGATACTTCTGAAATAGAAGCTGTTGATATACGTAATGAATCACCATGTGTATTAAGTGAAGAATATGCATTACCATTGATGCGTGCTATTAAGCAAAAGCTTCGAGTAGTCGAACTACAGGATGTGTCATTGACAAAAGACTTCGTACGGGATATCTCAGAAAGAGGTTTGGCATGCCAAGTTTTGAAATCGAGGTCTTGGCGTTTCCGGAAGTTGGGCTTGATGGGGGAGTTCAGGCATATGCACACACTTAATCTTGATTTCAGTTCTTCCCTTACCAGTTTTGAAGAAAACTGCTTTAATTGCATGCCCAATCTAATGTCTCTCTCAATGTGTGAAACAATGGTTGCAAATCTTTGGTCAACTGTTGCAGCTCTCTCTAAGCTTCCTTCTTTGGTTGAACTAAGGTTTCAATATTGGCAGTATTGTAATGATACAGGAGCATCTTTTACCTCATCCAGTGGGAAGTCAGATGGCACTGCCGATTTTAGTTTACTTGATAGAGTTCCTTTTATTGGTGAATCCTGCATTGATACAAGGGAACTAACAGATCTTAACATTAGTGTCGAGGATCCACTTAGAAATTTTTATTCCTTTGATGAAGAAGTTATGAGTTATGATGTTCAAAGCATGGTTGAGGACTCGTCAGATGATAGTGAAATTGATTTGACAAATCATCATCATAGAAACTGGTTGTTAGATGTTTTTCCTAGGTGGAGTTTACAAATGCCTCTTCAGAGCGAGAATGAAGAGCCATCAAGAGGTTCCTTTACAGGGAATGGTATTGATGTTTCCATGAAGTATATGTCTTGTCATGCATCACCAATATGTAAGGAAAAATATTACAGAGAATTCATGCTAGCTTCATTACCGAACCTGAAAAGTTTAGATAATCTGCCTATCAGAAATATTGACAAGGAAAGGGCTACTGGAATATTTTATCAATACTTTGAATATCTTCCATACAGATGGAAGAGCAAAGAGAGTGTTTTAAGTATCTTACACAAGCGAGAAATAAAATCAGGCCGTATTAAGGTGCAATCTTCAAAGCGTAGCCCGTCAAATCCTCATGGAACGTCTCAACATTTTTATACTAGGTCCCTTTCTGCTGCTAAACTGGGGTCTTCAACTTGGCCTTTCTTACATCCCCTTTCCCTATCAGGATGTGAATTGGACAGGGGCTTTCGTCCAAGGCAGTTTGAGTATCACCCATCTGACTCCAGTTTGATGGTCTTTGGAACTCTAGATGGTGAAGTAGTTGTCATCAATCATGAGAGTGAACGCATTGTGAGTTATATCCCATCACTTGGCGCAATGAATAGTGTCTTGGGTCTTTGTTGGCTCAAGAAATATCCTTCAAAGCTTATAGCAGGTTCAGATAACGGTACCCTGAAATTGTATGACATCAACCATATACCAAAACAAATTACTGGCTTATATGGGAATTCTGCTTGTGTTACCTTTGATGAATTTGACAGCCTGACATCTGTTCATGTTAACTCTACGGATGAACTATTTCTTGCAAGTGGTTACTCAAGAAATGTTGCTTTGTATGACATCAACAGTGGAAAGCGCTTACAAGTGTTCACAGATATGCATCATGGGCATATTAATGTAGTAAAGTTTTCAAATCATTCCCCATCAATTTTTGCTACTTCATCATTTGATCAGGATGTCAAGATGTGGGACTTGAGACAGAAACCAGTAAACCCTTGCTTCACTGCTTCGAGCTCTAGAGGAAATGTGATGGTTTGTTTTTCTCCAGATGACCAATATATCCTAGCATCGGCAGTTGATAATGAGGTTCGACAATTTATGGCTGTTGATGGTAGGCTTCACTTAGTTTTTGATATAGCTCCAACTAAAAGATGTCAAAATTATACTCGTTCTTATTACATGAATGGAAGGGACTACATTATAAGTGGAAGTTGTGATGAACACATTGTCCGTGTTTGTTGTGCTCAAACAGGGAGGCGCCTTAGAGATATTTCTCTCGAGGGTAAAAGCTTAGGAAGTTCCATGTTTGTTCAATCTTTGAGAGGCGATCCTTTTAGGGATTTCAATATGAGCGTTTTAGCAGCCTACGTGCGACCTGGCTCCAAGTCTGAAATTGTCAAGATCAATTTACTAGCATCTAGTGACCATGCTAAGGGCGACTCGGATGCCTATCCTGTATGCCCATCCCACATCATGGGAGCTTGA 2406 0.3965 MAVDILTLENRYIDSCRRHGVLPNAAILSSFFKAEVKKSHQEPCILDILIDDLKDIDFAPLFEICSNLDTSEIEAVDIRNESPCVLSEEYALPLMRAIKQKLRVVELQDVSLTKDFVRDISERGLACQVLKSRSWRFRKLGLMGEFRHMHTLNLDFSSSLTSFEENCFNCMPNLMSLSMCETMVANLWSTVAALSKLPSLVELRFQYWQYCNDTGASFTSSSGKSDGTADFSLLDRVPFIGESCIDTRELTDLNISVEDPLRNFYSFDEEVMSYDVQSMVEDSSDDSEIDLTNHHHRNWLLDVFPRWSLQMPLQSENEEPSRGSFTGNGIDVSMKYMSCHASPICKEKYYREFMLASLPNLKSLDNLPIRNIDKERATGIFYQYFEYLPYRWKSKESVLSILHKREIKSGRIKVQSSKRSPSNPHGTSQHFYTRSLSAAKLGSSTWPFLHPLSLSGCELDRGFRPRQFEYHPSDSSLMVFGTLDGEVVVINHESERIVSYIPSLGAMNSVLGLCWLKKYPSKLIAGSDNGTLKLYDINHIPKQITGLYGNSACVTFDEFDSLTSVHVNSTDELFLASGYSRNVALYDINSGKRLQVFTDMHHGHINVVKFSNHSPSIFATSSFDQDVKMWDLRQKPVNPCFTASSSRGNVMVCFSPDDQYILASAVDNEVRQFMAVDGRLHLVFDIAPTKRCQNYTRSYYMNGRDYIISGSCDEHIVRVCCAQTGRRLRDISLEGKSLGSSMFVQSLRGDPFRDFNMSVLAAYVRPGSKSEIVKINLLASSDHAKGDSDAYPVCPSHIMGA 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04721 801 Gene3D Ribonuclease Inhibitor 92 226 IPR032675 -
Tsu01g04721 801 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 633 IPR001680 GO:0005515
Tsu01g04721 801 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 598 633 - -
Tsu01g04721 801 PANTHER BNAC09G30780D PROTEIN 2 786 IPR046377 GO:0071493|GO:0080008
Tsu01g04721 801 SUPERFAMILY RNI-like 91 365 - -
Tsu01g04721 801 Pfam WD domain, G-beta repeat 596 631 IPR001680 GO:0005515
Tsu01g04721 801 SUPERFAMILY WD40 repeat-like 464 731 IPR036322 GO:0005515
Tsu01g04721 801 SMART WD40_4 590 631 IPR001680 GO:0005515
Tsu01g04721 801 SMART WD40_4 549 587 IPR001680 GO:0005515
Tsu01g04721 801 SMART WD40_4 494 536 IPR001680 GO:0005515
Tsu01g04721 801 SMART WD40_4 636 674 IPR001680 GO:0005515
Tsu01g04721 801 Gene3D - 462 749 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g04721 517 680 Miscellaneous Gene Families AT5G08390 26.506 5.83e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04721 - - gmx:100806443 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04721 01 54487546 54495472 Tsu01g04721 01 54487546 54495472 ECH