Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g04700 ATGTCCTCTTCTATCTCACCATCACTCTCTTCTCCTTTCATCCACGATTCTTCAACTCCTCGCTATGGAACCAAGCTTTTCACTCTTCCTCACTCTACTTCCACACGCAAATCGAGATGCTTCAAATCTTTCTCTTCAAAGTGCTCCCTCGACAATATCCCCAAACAATTCAGACAGGAAAATCTCAAAGATGGATTGATGGATAACTACAAGAATACACCCCAGTTTCTGTACGGTCTTACTCCTTCGCAAATGGACATGTTCCTAAATGCAGACAATCCTGTGCACAAGATGTCTGGAAATGTTACAGAGGAAAGCATTTCAGCTGCCAAAAGTTATTTGGAGAATAGTGGGATGGGTAGTATATCTAGCATGGGTAAGAATGGCCCGTCAAGGCACAGCATGAGTGTCAGTATGTATAGAGGAGGAGGTAGGGGGAGAAGGCCTAGAAGAGCTCCACCGGATTTGCCATCTCTGCTCTTGGATGCTCGAATATGTTTTCTGGGTATGCCGATTGTACCAGCTGTGACAGAACTTATTCTGGGTCAACTTATGTATTTGGATTATGATGACCCTTCCAaacctatttatttatatattaattcgCCTGGGACTCAGaatgagaagagagagaatgtGGGATCAGAAACTGATGCTTATTCCATAGCTGATATGATTGCTCATGTCAAATCGGATGTCTATACTATCAATTTGTCAAAGGCGTTTGGCCAAGCAGCAATGCTTTTGTCTATCGGAAAAAAGGGTTATCGTGCTGTACTGCCAAATTCAGCCACAAAATTGTATCTCCCGAAATGCCACAGATCAAGTGGTTCCGTTTCAGATATGTGGATTAAGGCAAAAGAGCTGGAGGCAACTTCTGAGATTTACATTGAGTTGCTGTCAAAAGGAATAGGGAAACCAAGGGAAGAAATTGCTAAAGACATTCAGAGGACTAGATTTTTCCAAGCACAGGATGCCGTAGACTTCGGAATCGCGGACAAAATAATGGACTTCGGGGAAGATGCATATGAGAAGCGGGATTATAATGCAATACGTGCTGCAAGAGCACTCAAGAGAGGTGGTGGGAACCTTCAAGCGTCTCCTTCAGGACTTTAG 1116 0.422 MSSSISPSLSSPFIHDSSTPRYGTKLFTLPHSTSTRKSRCFKSFSSKCSLDNIPKQFRQENLKDGLMDNYKNTPQFLYGLTPSQMDMFLNADNPVHKMSGNVTEESISAAKSYLENSGMGSISSMGKNGPSRHSMSVSMYRGGGRGRRPRRAPPDLPSLLLDARICFLGMPIVPAVTELILGQLMYLDYDDPSKPIYLYINSPGTQNEKRENVGSETDAYSIADMIAHVKSDVYTINLSKAFGQAAMLLSIGKKGYRAVLPNSATKLYLPKCHRSSGSVSDMWIKAKELEATSEIYIELLSKGIGKPREEIAKDIQRTRFFQAQDAVDFGIADKIMDFGEDAYEKRDYNAIRAARALKRGGGNLQASPSGL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g04700 371 Gene3D - 137 339 - -
Tsu01g04700 371 Pfam Clp protease 157 337 IPR023562 -
Tsu01g04700 371 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 43 359 IPR023562 -
Tsu01g04700 371 SUPERFAMILY ClpP/crotonase 152 339 IPR029045 -
Tsu01g04700 371 PRINTS Clp protease catalytic subunit P signature 155 170 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu01g04700 371 PRINTS Clp protease catalytic subunit P signature 195 215 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu01g04700 371 PRINTS Clp protease catalytic subunit P signature 235 252 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu01g04700 371 PRINTS Clp protease catalytic subunit P signature 256 275 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu01g04700 371 PRINTS Clp protease catalytic subunit P signature 314 333 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu01g04700 371 CDD S14_ClpP_2 155 335 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu01g04700 371 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 1, CHLOROPLASTIC 43 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g04700 Tsu-Chr1 54314295 54317942 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g04700 K01358 - gmx:100820008 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g04700 01 54314295 54317942 Tsu01g04700 01 54314295 54317942 ECH